Browse Element(s) Details


Os.11251.1.S1_at

Description gb:AU070970
DB_XREF= gi:5038860
DB_XREF=AU070970
CLONE=R10548_1A
TID=Os.11251.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.11251 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0072F04.12), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0402011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03980OsAffx.411.1.S1_at11/1110+1798619..1799149retrotransposon protein, putative, unclassified
LOC_Os10g03990OsAffx.20768.1.S1_at11/1110+1802311..1804703Protein kinase domain containing protein
LOC_Os10g04000OsAffx.30269.1.S1_at11/1110+1812945..1814525Protein kinase domain containing protein
LOC_Os10g04010OsAffx.30269.2.S1_at11/1110+1817352..1818929Protein kinase domain containing protein
LOC_Os10g04020Os.11251.1.S1_at11/1110+1822922..1824142F-box domain containing protein, expressed
LOC_Os10g04030OsAffx.18119.1.S1_at11/1110+1825900..1826994hypothetical protein
LOC_Os10g04030OsAffx.30317.1.S1_at1/1110+1825900..1826994hypothetical protein
LOC_Os10g04040Os.46012.2.S1_x_at5/1110+1832146..1836361retrotransposon protein, putative, unclassified
LOC_Os10g04040Os.27088.1.A1_x_at3/1110+1832146..1836361retrotransposon protein, putative, unclassified
LOC_Os10g04040Os.46012.3.S1_x_at3/1110+1832146..1836361retrotransposon protein, putative, unclassified
LOC_Os10g04050Os.27408.1.S2_at11/1110+1842381..1850220transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g04050Os.27408.1.S1_at11/1110+1842381..1850220transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11251.1.S1_at--64--1831Chr10:1823568..1823592 (25 bp)
ACGCCGCGCTCTGGAAGCCGAGGTA
LOC_Os10g04020
Os.11251.1.S1_at--853--10291Chr10:1823605..1823629 (25 bp)
TTTCCTGCTGCAGCTCATCGGAGGC
LOC_Os10g04020
Os.11251.1.S1_at--332--911Chr10:1823693..1823717 (25 bp)
AGGCTGTGGCCTTTCGGAGAGCTCT
LOC_Os10g04020
Os.11251.1.S1_at--816--3951Chr10:1823707..1823731 (25 bp)
CGGAGAGCTCTTTGCGTCCATGAGA
LOC_Os10g04020
Os.11251.1.S1_at--915--6191Chr10:1823740..1823764 (25 bp)
GAGGCTACCGATTTATGCACCATTG
LOC_Os10g04020
Os.11251.1.S1_at--84--8131Chr10:1823767..1823791 (25 bp)
GGACTTGGACTTCGATTCATTCACA
LOC_Os10g04020
Os.11251.1.S1_at--567--3591Chr10:1823784..1823808 (25 bp)
CATTCACACGCTTTTGGGTGTTCGA
LOC_Os10g04020
Os.11251.1.S1_at--87--8811Chr10:1823802..1823826 (25 bp)
TGTTCGATGATAAGCCGTCGCCGTT
LOC_Os10g04020
Os.11251.1.S1_at--382--6691Chr10:1823824..1823848 (25 bp)
GTTGCCGGAGGAGATCACTGTCCCT
LOC_Os10g04020
Os.11251.1.S1_at--590--6391Chr10:1824010..1824034 (25 bp)
GATCGACGTGCTTTGGTTTCGCTGT
LOC_Os10g04020
Os.11251.1.S1_at--196--6671Chr10:1824033..1824057 (25 bp)
GTTGCAGAGCCTTTTTGGCTTAGTT
LOC_Os10g04020
Target Sequence 
ACGCCGCGCTCTGGAAGCCGAGGTACGAGAAGCTGCCTTTCCTGCTGCAGCTCATCGGAGGCGGCGACGACGACGACGGC
GAGCCGACGACGGAGGTGAGCTGGAAGAAGAAGTATGTGGCGGCGAGGCTGTGGCCTTTCGGAGAGCTCTTTGCGTCCAT
GAGAGAGACACGGAGGCTACCGATTTATGCACCATTGTTGGACTTGGACTTCGATTCATTCACACGCTTTTGGGTGTTCG
ATGATAAGCCGTCGCCGTTGCCGGAGGAGATCACTGTCCCTCGTCATCGTCGCCGCCGTCGGAGGTGGAGAGCGATGCCA
AGGGACGCCGGCCATNGCCTTGCGGCGCGGGGACATGGCGGCGACAAGAAGCCGCGGCATNGCGCCGGCGCGGTTCACTC
GCCGTCTTCCCGGTTCCGATGGAAGCACCGGTGATCNCCGGCGATCGACGTGCTTTGGTTTCGCTGTTGCAGAGCCTTTT
TGGCTTAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11251.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis