Browse Element(s) Details


OsAffx.30269.2.S1_at

Description tigr:9638.m00309
TID=OsAffx.30269.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0401011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03970Os.46500.2.S1_at11/1110+1790877..1793610transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03970Os.46500.1.S1_at4/1110+1790877..1793610transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03980OsAffx.411.1.S1_at11/1110+1798619..1799149retrotransposon protein, putative, unclassified
LOC_Os10g03990OsAffx.20768.1.S1_at11/1110+1802311..1804703Protein kinase domain containing protein
LOC_Os10g04000OsAffx.30269.1.S1_at11/1110+1812945..1814525Protein kinase domain containing protein
LOC_Os10g04010OsAffx.30269.2.S1_at11/1110+1817352..1818929Protein kinase domain containing protein
LOC_Os10g04020Os.11251.1.S1_at11/1110+1822922..1824142F-box domain containing protein, expressed
LOC_Os10g04030OsAffx.18119.1.S1_at11/1110+1825900..1826994hypothetical protein
LOC_Os10g04030OsAffx.30317.1.S1_at1/1110+1825900..1826994hypothetical protein
LOC_Os10g04040Os.46012.2.S1_x_at5/1110+1832146..1836361retrotransposon protein, putative, unclassified
LOC_Os10g04040Os.27088.1.A1_x_at3/1110+1832146..1836361retrotransposon protein, putative, unclassified
LOC_Os10g04040Os.46012.3.S1_x_at3/1110+1832146..1836361retrotransposon protein, putative, unclassified
LOC_Os10g04050Os.27408.1.S2_at11/1110+1842381..1850220transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g04050Os.27408.1.S1_at11/1110+1842381..1850220transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0009908biological_processflower development
GO:0004709molecular_functionMAP kinase kinase kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30269.2.S1_at--326--5851Chr10:1817879..1817903 (25 bp)
GACCATGGCTGGATCGAAGTACTCG
LOC_Os10g04010
OsAffx.30269.2.S1_at--666--8251Chr10:1817855..1817879 (25 bp)
GGCACCGTCTCCATTAACATAGCAA
LOC_Os10g04010
OsAffx.30269.2.S1_at--711--111Chr10:1817806..1817830 (25 bp)
ATTACGAAGCTTCAGAGTCTCCGGC
LOC_Os10g04010
OsAffx.30269.2.S1_at--1149--1511Chr10:1817799..1817823 (25 bp)
AGCTTCAGAGTCTCCGGCCAAGAGG
LOC_Os10g04010
OsAffx.30269.2.S1_at--619--2211Chr10:1817725..1817749 (25 bp)
ACAACCATGGTTGGATCGATGTCCT
LOC_Os10g04010
OsAffx.30269.2.S1_at--416--5271Chr10:1817664..1817688 (25 bp)
GAATGCGCCTGAAGAATTCGATGTA
LOC_Os10g04010
OsAffx.30269.2.S1_at--943--5951Chr10:1817514..1817538 (25 bp)
GAGAATTTTGCTTGTAGCTGTTCAT
LOC_Os10g04010
OsAffx.30269.2.S1_at--360--1471Chr10:1817448..1817472 (25 bp)
AGAATGTTCTCATGATCCTCGTCCC
LOC_Os10g04010
OsAffx.30269.2.S1_at--579--4051Chr10:1817422..1817446 (25 bp)
CGATCCCCAGTCGATGTGCTCATAA
LOC_Os10g04010
OsAffx.30269.2.S1_at--415--6271Chr10:1817410..1817434 (25 bp)
GATGTGCTCATAACCTTTTTCTCTC
LOC_Os10g04010
OsAffx.30269.2.S1_at--723--10311Chr10:1817393..1817417 (25 bp)
TTTCTCTCCCTAATCTTCATACAGA
LOC_Os10g04010
Target Sequence 
GACCATGGCTGGATCGAAGTACTCGGCACCGTCTCCATTAACATAGCAAAAAAAAAAACAGCAGCAGCAGAAGATTACGA
AGCTTCAGAGTCTCCGGCCAAGAGGGTGAGAGCAATGGCGTGCTCGCCGTCGTCGGTGCCGGACTGGGACTCCGACAACC
ATGGTTGGATCGATGTCCTCAGCGCGTCACCGGCCGACGACAATGGCGGTGAAGGGAATGCGCCTGAAGAATTCGATGTA
GTGGCAGCCGCCGATCAGATTTTCGGCGAAGCTGTGGGTAGCATTGTTGTAGGAGTAGGTAGTGAACAATCTGTAGTTGT
TGAGAACCAGGAGGATGAGTTCATCTCCTTGAGTTATTGCAGCGAGAGAATTTTGCTTGTAGCTGTTCATGCTGCTGATA
ATAATGCGGCCTCTCGAAAGGCCGGAATAAAAGAATGTTCTCATGATCCTCGTCCCTCGATCCCCAGTCGATGTGCTCAT
AACCTTTTTCTCTCCCTAATCTTCATACAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30269.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis