Browse Element(s) Details


OsAffx.18119.1.S1_at

Description tigr:9638.m00311
TID=OsAffx.18119.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0403011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03990OsAffx.20768.1.S1_at11/1110+1802311..1804703Protein kinase domain containing protein
LOC_Os10g04000OsAffx.30269.1.S1_at11/1110+1812945..1814525Protein kinase domain containing protein
LOC_Os10g04010OsAffx.30269.2.S1_at11/1110+1817352..1818929Protein kinase domain containing protein
LOC_Os10g04020Os.11251.1.S1_at11/1110+1822922..1824142F-box domain containing protein, expressed
LOC_Os10g04030OsAffx.18119.1.S1_at11/1110+1825900..1826994hypothetical protein
LOC_Os10g04030OsAffx.30317.1.S1_at1/1110+1825900..1826994hypothetical protein
LOC_Os10g04040Os.46012.2.S1_x_at5/1110+1832146..1836361retrotransposon protein, putative, unclassified
LOC_Os10g04040Os.27088.1.A1_x_at3/1110+1832146..1836361retrotransposon protein, putative, unclassified
LOC_Os10g04040Os.46012.3.S1_x_at3/1110+1832146..1836361retrotransposon protein, putative, unclassified
LOC_Os10g04050Os.27408.1.S2_at11/1110+1842381..1850220transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g04050Os.27408.1.S1_at11/1110+1842381..1850220transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18119.1.S1_at--77--1671Chr10:1826438..1826462 (25 bp)
AGCCCGAGCACGAGCTCATGTCGCT
LOC_Os10g04030
OsAffx.18119.1.S1_at--209--3991Chr10:1826534..1826558 (25 bp)
CGTGCGTCGGGCTTAACCTCCTCGT
LOC_Os10g04030
OsAffx.18119.1.S1_at--47--10492Chr10:1826546..1826570 (25 bp)
TTAACCTCCTCGTCGCGGAGCACGA
LOC_Os10g04030
OsAffx.18119.1.S1_at--634--8071Chr10:1826562..1826586 (25 bp)
GGAGCACGACTCCACGCTCTGGAAG
LOC_Os10g04030
OsAffx.18119.1.S1_at--1044--8731Chr10:1826591..1826615 (25 bp)
TGTACACGAAGCTGCGTTCCCAGCT
LOC_Os10g04030
OsAffx.18119.1.S1_at--658--7871Chr10:1826630..1826654 (25 bp)
GGTTTCTCGGAGTCAGCTATGGCGA
LOC_Os10g04030
OsAffx.18119.1.S1_at--102--4591Chr10:1826716..1826740 (25 bp)
GCGCATGACGTGTTCATGGGAGAAA
LOC_Os10g04030
OsAffx.18119.1.S1_at--111--811Chr10:1826731..1826755 (25 bp)
ATGGGAGAAATACTACTGCCGGTGA
LOC_Os10g04030
OsAffx.18119.1.S1_at--56--9911Chr10:1826744..1826768 (25 bp)
TACTGCCGGTGATGACAGAGTGGAT
LOC_Os10g04030
OsAffx.18119.1.S1_at--529--6011Chr10:1826769..1826793 (25 bp)
GAGAGTTCCATGGATACGTAGGTAT
LOC_Os10g04030
OsAffx.18119.1.S1_at--702--9931Chr10:1826783..1826807 (25 bp)
TACGTAGGTATCCATTTGTGCCGCC
LOC_Os10g04030
Target Sequence 
AGCCCGAGCACGAGCTCATGTCGCTCCCCGACGACGTCAAGGTCGCCATCCTCGCCAGGCTCGCCGCCGGCGAGGACCTC
GCGAGGGTGGAGTGCACGTGCGTCGGGCTTAACCTCCTCGTCGCGGAGCACGACTCCACGCTCTGGAAGCCCATGTACAC
GAAGCTGCGTTCCCAGCTGCGGCGGCGGCTGCGGTTTCTCGGAGTCAGCTATGGCGAGCCGACGGCGGTGAGCTGGAAGG
CTAGGTACGTGGCGGTGAGGCGGCGGCGTGTTCCGGCGGCGCATGACGTGTTCATGGGAGAAATACTACTGCCGGTGATG
ACAGAGTGGATGAGAGTTCCATGGATACGTAGGTATCCATTTGTGCCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18119.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis