Browse Element(s) Details


Os.11287.1.S1_at

Description gb:AK111790.1
DB_XREF= gi:37988453
TID=Os.11287.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11287 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023095D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023095D11, full insert sequence.
FL= gb:AK111790.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5093011/11Senescence-associated protein DIN1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g50910Os.48137.1.A1_at11/116+30796115..30814785Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os06g50910Os.49175.1.S1_at11/116+30796115..30814785Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os06g50910Os.24117.1.A1_at1/116+30796115..30814785Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os06g50910OsAffx.31869.4.S1_x_at1/116+30796115..30814785Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os06g50900Os.11409.1.S1_at11/116+30798420..30800415expressed protein
LOC_Os06g50900OsAffx.4432.1.S1_at1/116+30798420..30800415expressed protein
LOC_Os06g50900OsAffx.4432.1.S1_x_at1/116+30798420..30800415expressed protein
LOC_Os06g50920Os.53650.1.S1_at11/116+30816442..30822355protein kinase family protein, putative, expressed
LOC_Os06g50930Os.11287.1.S1_at11/116+30822453..30824784Senescence-associated protein DIN1, putative, expressed
LOC_Os06g50940Os.56682.1.S1_at11/116+30827275..30829400GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g50950Os.27247.1.S1_at11/116+30837055..30838936GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g50960Os.47341.1.A1_at11/116+30845362..30846881Pollen allergen family protein, expressed
LOC_Os06g50970OsAffx.28201.1.S1_s_at11/116+30847400..30849740expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
GO:0009416biological_processresponse to light stimulus
GO:0009744biological_processresponse to sucrose stimulus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11287.1.S1_at--958--251Chr06:30823983..30824004 (22 bp)
ATATGTACAAAACCGGCTCAGGACT
LOC_Os06g50930
Os.11287.1.S1_at--108--5491Chr06:30823086..30823110 (25 bp)
GAAAGTGTCGACTACCTTTGGGAAG
LOC_Os06g50930
Os.11287.1.S1_at--250--8231Chr06:30822945..30822969 (25 bp)
GGCAAGAGATCCCTCATGGCAGCAT
LOC_Os06g50930
Os.11287.1.S1_at--50--8991Chr06:30822828..30822943 (25 bp)
TGAACTCTGCTCTGCTGGTTTTACT
LOC_Os06g50930
Os.11287.1.S1_at--239--8591Chr06:30822813..30822836 (24 bp)
TGGTTTTACTGCTGTCACCGACATC
LOC_Os06g50930
Os.11287.1.S1_at--924--5251Chr06:30822762..30822786 (25 bp)
GAATGAACTCCCAACCAACAAGTGA
LOC_Os06g50930
Os.11287.1.S1_at--789--1251Chr06:30822725..30822749 (25 bp)
AGATTTTCTGCGTTTCTGAAACCTA
LOC_Os06g50930
Os.11287.1.S1_at--859--471Chr06:30822697..30822721 (25 bp)
ATCTGCAGATGACTTCACGCTCCAC
LOC_Os06g50930
Os.11287.1.S1_at--606--6991Chr06:30822668..30822692 (25 bp)
GTACGCCTGTACACTATGTGGTCTT
LOC_Os06g50930
Os.11287.1.S1_at--1156--731Chr06:30822559..30822583 (25 bp)
ATGTTTAATTTGCTGTCCTGTCACC
LOC_Os06g50930
Os.11287.1.S1_at--551--2231Chr06:30822489..30822513 (25 bp)
ACAATGGCACCTTGCAGTGACTGCA
LOC_Os06g50930
Target Sequence 
ATATGTACAAAACCGGCTCAGGACTGACNAAAAAACACACATTTTCTTGAGAAAGTGTCGACTACCTTTGGGAAGGAGGA
TGAGATCATCGTTGGATGCCAAAGTGGCAAGAGATCCCTCATGGCAGCATCTGAACTCTGCTCTGCTGGTTTTACTGCTG
TCACCGACATCGCCGGTGGATTTTCTGCCTGGAAGGAGAATGAACTCCCAACCAACAAGTGACGTTGGCCTGAAAGATTT
TCTGCGTTTCTGAAACCTAATAATCTGCAGATGACTTCACGCTCCACGGCTGTACGCCTGTACACTATGTGGTCTTCTCA
AATGTGAGGCATCAGAAGAATACTGAATAAATGGATTTTGAAGGGATGAATGGTGCTAGTTTAGAGACTAGGGTTTTATT
ATGTTTAATTTGCTGTCCTGTCACCCCTTCCATGTTACCTTTCATGTTAATAAACTTTCTTGGCAACATGACAATGGCAC
CTTGCAGTGACTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11287.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis