Browse Element(s) Details


Os.11302.1.S1_at

Description gb:AK061219.1
DB_XREF= gi:32971237
TID=Os.11302.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11302 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-210-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-210-E09, full insert sequence.
FL= gb:AK061219.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g062804/11hypothetical protein
LOC_Os01g111201/11RNA-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g06244Os.54167.1.S1_at3/114+3225957..3230078Protein kinase domain containing protein
LOC_Os04g06260Os.10827.1.S1_x_at4/114+3244944..3247796transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g06260Os.46055.2.S1_x_at2/114+3244944..3247796transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g06270Os.10827.1.S1_x_at4/114+3249992..3251187hypothetical protein
LOC_Os04g06270Os.46055.2.S1_x_at2/114+3249992..3251187hypothetical protein
LOC_Os04g06280OsAffx.25936.1.S1_s_at10/114+3251875..3264994hypothetical protein
LOC_Os04g06280OsAffx.25936.7.S1_s_at10/114+3251875..3264994hypothetical protein
LOC_Os04g06280OsAffx.25936.1.S1_at8/114+3251875..3264994hypothetical protein
LOC_Os04g06280Os.11302.1.S1_at4/114+3251875..3264994hypothetical protein
LOC_Os04g06280OsAffx.25936.2.S1_x_at4/114+3251875..3264994hypothetical protein
LOC_Os04g06280Os.51841.1.S1_x_at3/114+3251875..3264994hypothetical protein
LOC_Os04g06280OsAffx.7520.1.S1_at3/114+3251875..3264994hypothetical protein
LOC_Os04g06280Os.10263.1.S1_at2/114+3251875..3264994hypothetical protein
LOC_Os04g06280OsAffx.348.1.S1_at2/114+3251875..3264994hypothetical protein
LOC_Os04g06280OsAffx.25936.5.S1_x_at2/114+3251875..3264994hypothetical protein
LOC_Os04g06280Os.11302.2.S1_at1/114+3251875..3264994hypothetical protein
LOC_Os04g06280OsAffx.10222.1.S1_x_at1/114+3251875..3264994hypothetical protein
LOC_Os04g06290Os.54691.1.S1_x_at2/114+3275679..3281299Zinc knuckle family protein
LOC_Os04g06290Os.51841.1.S1_x_at1/114+3275679..3281299Zinc knuckle family protein
LOC_Os04g06290OsAffx.27770.1.S1_x_at1/114+3275679..3281299Zinc knuckle family protein
LOC_Os04g06290OsAffx.17666.1.S1_at1/114+3275679..3281299Zinc knuckle family protein
LOC_Os04g06300OsAffx.13691.1.S1_at11/114+3283235..3285505hypothetical protein
LOC_Os04g06300Os.26930.1.S2_x_at1/114+3283235..3285505hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11302.1.S1_at--1099--2611Chr07:18760721..18760745 (25 bp)
AACCGACCAAACTATGTGAGTAGTT
NONE
Os.11302.1.S1_at--144--6792Chr07:18760743..18760767 (25 bp)
GTTAGATGATTTTTTAAGCATGCAT
NONE
Os.11302.1.S1_at--500--2713Chr07:18760758..18760782 (25 bp)
AAGCATGCATATGTATTCTAGACAA
NONE
Os.11302.1.S1_at--658--10434Chr07:18760787..18760811 (25 bp)
TTAGGTCTAATGGTGCTGAGCATCT
NONE
Os.11302.1.S1_at--450--4753Chr07:18760801..18760825 (25 bp)
GCTGAGCATCTGTTAGGTTAGGTCT
NONE
Os.11302.1.S1_at--527--712Chr07:18760827..18760851 (25 bp)
ATGATGTATTTGATAACTGTGGGCA
NONE
Os.11302.1.S1_at--283--9814Chr07:18760840..18760864 (25 bp)
TAACTGTGGGCAAGTAAGTTGCTTT
NONE
Os.11302.1.S1_at--233--5591Chr07:18760870..18760894 (25 bp)
GAAATATCGAGGGAGTATGTGCTAT
NONE
Os.11302.1.S1_at--152--8031Chr07:18760881..18760905 (25 bp)
GGAGTATGTGCTATAGTCTATCGGA
NONE
Os.11302.1.S1_at--568--2233Chr07:18760922..18760946 (25 bp)
AAATTATCGTTTCTTAGGCCAACTG
NONE
Os.11302.1.S1_at--525--9551Chr07:18760933..18760957 (25 bp)
TCTTAGGCCAACTGATACTGTGATA
NONE
Target Sequence 
AACCGACCAAACTATGTGAGTAGTTAGATGATTTTTTAAGCATGCATATGTATTCTAGACAAGTTGTTAGGTCTAATGGT
GCTGAGCATCTGTTAGGTTAGGTCTAATGATGTATTTGATAACTGTGGGCAAGTAAGTTGCTTTAATTTGAAATATCGAG
GGAGTATGTGCTATAGTCTATCGGATAATTTATTGATGTCTAAATTATCGTTTCTTAGGCCAACTGATACTGTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11302.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis