Browse Element(s) Details


Os.11302.2.S1_at

Description gb:AK060056.1
DB_XREF= gi:32970074
TID=Os.11302.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11302 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-210-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-305-E08, full insert sequence.
FL= gb:AK060056.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g062801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g06244Os.54167.1.S1_at3/114+3225957..3230078Protein kinase domain containing protein
LOC_Os04g06260Os.10827.1.S1_x_at4/114+3244944..3247796transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g06260Os.46055.2.S1_x_at2/114+3244944..3247796transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g06270Os.10827.1.S1_x_at4/114+3249992..3251187hypothetical protein
LOC_Os04g06270Os.46055.2.S1_x_at2/114+3249992..3251187hypothetical protein
LOC_Os04g06280OsAffx.25936.1.S1_s_at10/114+3251875..3264994hypothetical protein
LOC_Os04g06280OsAffx.25936.7.S1_s_at10/114+3251875..3264994hypothetical protein
LOC_Os04g06280OsAffx.25936.1.S1_at8/114+3251875..3264994hypothetical protein
LOC_Os04g06280Os.11302.1.S1_at4/114+3251875..3264994hypothetical protein
LOC_Os04g06280OsAffx.25936.2.S1_x_at4/114+3251875..3264994hypothetical protein
LOC_Os04g06280Os.51841.1.S1_x_at3/114+3251875..3264994hypothetical protein
LOC_Os04g06280OsAffx.7520.1.S1_at3/114+3251875..3264994hypothetical protein
LOC_Os04g06280Os.10263.1.S1_at2/114+3251875..3264994hypothetical protein
LOC_Os04g06280OsAffx.348.1.S1_at2/114+3251875..3264994hypothetical protein
LOC_Os04g06280OsAffx.25936.5.S1_x_at2/114+3251875..3264994hypothetical protein
LOC_Os04g06280Os.11302.2.S1_at1/114+3251875..3264994hypothetical protein
LOC_Os04g06280OsAffx.10222.1.S1_x_at1/114+3251875..3264994hypothetical protein
LOC_Os04g06290Os.54691.1.S1_x_at2/114+3275679..3281299Zinc knuckle family protein
LOC_Os04g06290Os.51841.1.S1_x_at1/114+3275679..3281299Zinc knuckle family protein
LOC_Os04g06290OsAffx.27770.1.S1_x_at1/114+3275679..3281299Zinc knuckle family protein
LOC_Os04g06290OsAffx.17666.1.S1_at1/114+3275679..3281299Zinc knuckle family protein
LOC_Os04g06300OsAffx.13691.1.S1_at11/114+3283235..3285505hypothetical protein
LOC_Os04g06300Os.26930.1.S2_x_at1/114+3283235..3285505hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11302.2.S1_at--77--3291NONE
CAAACTATAGCTTGCTGGCGGCGTT
NONE
Os.11302.2.S1_at--77--10711Chr07:18761526..18761550 (25 bp)
TTGCTGGCGGCGTTGGATCGACCTT
NONE
Os.11302.2.S1_at--438--6391Chr07:18761541..18761565 (25 bp)
GATCGACCTTGCCTCCAGTTGTTTG
NONE
Os.11302.2.S1_at--1140--1231Chr07:18761557..18761581 (25 bp)
AGTTGTTTGCCGTCATGCCAGTCCT
NONE
Os.11302.2.S1_at--404--592Chr07:18761571..18761595 (25 bp)
ATGCCAGTCCTGGAAGGCCATGCCG
NONE
Os.11302.2.S1_at--422--4712Chr07:18761644..18761668 (25 bp)
GCTGCGGCCTCCTTAGGGATGTTGC
NONE
Os.11302.2.S1_at--255--3792Chr07:18761652..18761676 (25 bp)
CTCCTTAGGGATGTTGCCGTCGGGC
NONE
Os.11302.2.S1_at--1128--2051Chr07:18761741..18761765 (25 bp)
ACTTGCGACTATTGTGCTTGTGGGA
NONE
Os.11302.2.S1_at--93--6691Chr07:18761778..18761802 (25 bp)
GTTGCTGTGCTTTTGGTCGTTGTGC
NONE
Os.11302.2.S1_at--555--271Chr07:18761858..18761882 (25 bp)
ATATGTGCTACTGTTGCTCTCGCTA
NONE
Os.11302.2.S1_at--987--6671Chr07:18761870..18761894 (25 bp)
GTTGCTCTCGCTATAGCAGGAAGAT
NONE
Target Sequence 
CAAACTATAGCTTGCTGGCGGCGTTGGATCGACCTTGCCTCCAGTTGTTTGCCGTCATGCCAGTCCTGGAAGGCCATGCC
GTTGTGCCCCATGTGCATCGCCTCCGCACCTGGCTGTCCGCCGCCAGTGGCTGCGGCCTCCTTAGGGATGTTGCCGTCGG
GCGCGTTGCCATGCGGCAGATGAACGGGCTGAAGCAGCAATACGTATGAACATAAGGTGACACTGAACTTGCGACTATTG
TGCTTGTGGGATGTTATTTTGTTGTTGCTGTGCTTTTGGTCGTTGTGCTGTTGCTGCTGTGCTTTTGGCCATTGCTCTGC
TGCTACTGCTGTGATGCTATTGCATATGTGCTACTGTTGCTCTCGCTATAGCAGGAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11302.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis