Browse Element(s) Details


Os.11323.1.S1_at

Description gb:AK071812.1
DB_XREF= gi:32981835
TID=Os.11323.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11323 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-015-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023113D08, full insert sequence.
FL= gb:AK103958.1 gb:AK071812.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2012011/11galactinol synthase 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20100Os.5261.1.S1_a_at11/113+11330276..1133456630S ribosomal protein S1, chloroplast precursor, putative, expressed
LOC_Os03g20110OsAffx.25158.1.S1_at11/113+11339199..11339450hypothetical protein
LOC_Os03g20120Os.11323.1.S1_at11/113+11346033..11347735galactinol synthase 3, putative, expressed
LOC_Os03g20140NANA3+11352172..11355543transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g20150OsAffx.25160.1.S1_at2/113+11361946..11364415hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016051biological_processcarbohydrate biosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11323.1.S1_at--41--8011Chr03:11347081..11347105 (25 bp)
GGAGGCATCCAGAGAACGTCCAGCT
LOC_Os03g20120
Os.11323.1.S1_at--765--5951Chr03:11347092..11347116 (25 bp)
GAGAACGTCCAGCTCGAGAAGGTCA
LOC_Os03g20120
Os.11323.1.S1_at--848--5311Chr03:11347109..11347133 (25 bp)
GAAGGTCAAGGTCGTGCACTACTGC
LOC_Os03g20120
Os.11323.1.S1_at--269--9711Chr03:11347292..11347316 (25 bp)
TCAAGAAGTGGTGGGACGTCTACAA
LOC_Os03g20120
Os.11323.1.S1_at--1017--1931Chr03:11347319..11347343 (25 bp)
ACGGCAGCCTGGACTTCAAGGGCCT
LOC_Os03g20120
Os.11323.1.S1_at--605--3831Chr03:11347524..11347548 (25 bp)
CTGCATCCCGTATCTTGGTATTTTT
LOC_Os03g20120
Os.11323.1.S1_at--1034--211Chr03:11347561..11347585 (25 bp)
ATTTGGGATCAGTATGTTCCTTCTA
LOC_Os03g20120
Os.11323.1.S1_at--623--731Chr03:11347574..11347598 (25 bp)
ATGTTCCTTCTAGTACACTTCACAA
LOC_Os03g20120
Os.11323.1.S1_at--963--9931Chr03:11347621..11347645 (25 bp)
TACGTATGCTGTGGATTTTGTGAAT
LOC_Os03g20120
Os.11323.1.S1_at--530--5231Chr03:11347642..11347666 (25 bp)
GAATATCTGTTCCTTTTGAGTCAAA
LOC_Os03g20120
Os.11323.1.S1_at--445--2531Chr03:11347666..11347690 (25 bp)
AACTCAACCAGTGTGATCTTTGTAT
LOC_Os03g20120
Target Sequence 
GGAGGCATCCAGAGAACGTCCAGCTCGAGAAGGTCAAGGTCGTGCACTACTGCGCAGCGGGATCGAAGCCGTGGAGGTAC
ACGGGCAAGGAGGCGAACATGGACAGGGAGGACATCAAGATGCTGGTCAAGAAGTGGTGGGACGTCTACAACGACGGCAG
CCTGGACTTCAAGGGCCTCCCGCCCATCGCGGCCGCCGACGACGCCGACGAGGTCGAGGCGGCGGCCAAGAAGCCGCTGC
GCGCCGCGCTGGCGGAGGCCCGCACCGTCAAGTACGTCACGGCGCCATCGGCCGCGTGATCGTACGGCCACTGTCGCTTC
CCTCCGGTGCCCGGGCGTCCGGCTCCGGCGGCGTACCTCTGCATCCCGTATCTTGGTATTTTTTTAGGATGTCCAATTTG
GGATCAGTATGTTCCTTCTAGTACACTTCACAAATGTAACGAGGCTTGTTTAGAATACGTATGCTGTGGATTTTGTGAAT
ATCTGTTCCTTTTGAGTCAAAACTCAACCAGTGTGATCTTTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11323.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis