Browse Element(s) Details


Os.5261.1.S1_a_at

Description gb:AK061971.1
DB_XREF= gi:32971989
TID=Os.5261.1
CNT=29
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.5261 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001O08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-042-H07, full insert sequence.
FL= gb:AK061971.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2010011/1130S ribosomal protein S1, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20090Os.14823.1.S1_s_at11/113+11304927..11307055Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g20090Os.49619.1.S1_at10/113+11304927..11307055Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g20090Os.14823.1.S1_x_at1/113+11304927..11307055Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g20100Os.5261.1.S1_a_at11/113+11330276..1133456630S ribosomal protein S1, chloroplast precursor, putative, expressed
LOC_Os03g20110OsAffx.25158.1.S1_at11/113+11339199..11339450hypothetical protein
LOC_Os03g20120Os.11323.1.S1_at11/113+11346033..11347735galactinol synthase 3, putative, expressed
LOC_Os03g20140NANA3+11352172..11355543transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5261.1.S1_a_at--819--31Chr03:11331185..11331209 (25 bp)
ATTGGTGGAATCAATGGCCTTCTCC
LOC_Os03g20100
Os.5261.1.S1_a_at--955--10591Chr03:11331166..11331190 (25 bp)
TTCTCCATGTCAGCCAGATTAGTCA
LOC_Os03g20100
Os.5261.1.S1_a_at--995--10431Chr03:11331002..11331026 (25 bp)
TTATGATTCTAAGCCATGACCGTGA
LOC_Os03g20100
Os.5261.1.S1_a_at--655--1311Chr03:11330976..11331000 (25 bp)
AGAGGCCGTGTTAGTCTTTCTACTA
LOC_Os03g20100
Os.5261.1.S1_a_at--246--9831Chr03:11330953..11330977 (25 bp)
TAAAAAGCTTGAGCCGACACCTGGT
LOC_Os03g20100
Os.5261.1.S1_a_at--1023--5631Chr03:11330938..11330962 (25 bp)
GACACCTGGTGACATGATTCGCAAT
LOC_Os03g20100
Os.5261.1.S1_a_at--1098--6571Chr03:11330923..11330947 (25 bp)
GATTCGCAATCCAAAGCTTGTTTTT
LOC_Os03g20100
Os.5261.1.S1_a_at--328--6031Chr03:11330803..11330827 (25 bp)
GAGATGGCTCAGATATTCAGGCAGA
LOC_Os03g20100
Os.5261.1.S1_a_at--64--4971Chr03:11330581..11330605 (25 bp)
GCATCTTAGGGCCATTATCATCAGA
LOC_Os03g20100
Os.5261.1.S1_a_at--572--1411Chr03:11330559..11330583 (25 bp)
AGACACACCTTCTGAGGGCTCGGGA
LOC_Os03g20100
Os.5261.1.S1_a_at--773--10231Chr03:11330421..11330445 (25 bp)
TATTGTATTCCAACCATTTCCCATC
LOC_Os03g20100
Target Sequence 
ATTGGTGGAATCAATGGCCTTCTCCATGTCAGCCAGATTAGTCATGACCNGTNTTNCGNACATCTCGACAGTTCTGCAAC
CAGGAGATACGCTCAAGGTTATGATTCTAAGCCATGACCGTGAAAGAGGCCGTGTTAGTCTTTCTACTAAAAAGCTTGAG
CCGACACCTGGTGACATGATTCGCAATCCAAAGCTTGTTTTTGAGAAGGCTGATGAGATGGCTCAGATATTCAGGCAGAG
GATAGCTCAAGCAGAGGCAATGGCTCGTGCTGATATGTTAAGATTCCAGCCTGAGAGTGGATTAACTCTCAGTTCAGAGG
GCATCTTAGGGCCATTATCATCAGACACACCTTCTGAGGGCTCGGGAGAAGGGCAAACCACAGATGAATAGCTTCAATAG
GAAGATTACGTCTGAGTAGAAAGCTGTGATGGNAGCTCATCAACTCATTTTCCCACGATCTAAAAGGCATGAAGAAGACC
TATTGTATTCCAACCATTTCCCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5261.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis