Browse Element(s) Details


Os.49619.1.S1_at

Description gb:AK120551.1
DB_XREF= gi:37990174
TID=Os.49619.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49619 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013130B13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013130B13, full insert sequence.
FL= gb:AK120551.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2009010/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20060OsAffx.25156.1.S1_x_at2/113+11281031..11283633hypothetical protein
LOC_Os03g20060OsAffx.25156.5.S1_x_at2/113+11281031..11283633hypothetical protein
LOC_Os03g20070OsAffx.25157.1.S1_at11/113+11286443..11287140hypothetical protein
LOC_Os03g20080Os.27140.2.S1_at11/113+11290357..11294684retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g20080Os.27140.1.S1_a_at10/113+11290357..11294684retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g20080Os.27140.2.S2_at4/113+11290357..11294684retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g20080OsAffx.10048.1.S1_x_at1/113+11290357..11294684retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g20090Os.14823.1.S1_s_at11/113+11304927..11307055Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g20090Os.49619.1.S1_at10/113+11304927..11307055Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g20090Os.14823.1.S1_x_at1/113+11304927..11307055Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g20100Os.5261.1.S1_a_at11/113+11330276..1133456630S ribosomal protein S1, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009414biological_processresponse to water deprivation
GO:0009651biological_processresponse to salt stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005516molecular_functioncalmodulin binding
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49619.1.S1_at--59--3491Chr03:11305361..11305385 (25 bp)
CAGGCCGCCGTGTGAAAAGTCAGCA
LOC_Os03g20090
Os.49619.1.S1_at--333--8971Chr03:11305349..11305373 (25 bp)
TGAAAAGTCAGCACGGCCGCCATGG
LOC_Os03g20090
Os.49619.1.S1_at--387--10811Chr03:11305039..11305063 (25 bp)
TTGTCCGTTAAATTTTACTCATTCT
LOC_Os03g20090
Os.49619.1.S1_at--505--6091Chr03:11305010..11305034 (25 bp)
GAGTAAATACAGTACTGCCACTACT
LOC_Os03g20090
Os.49619.1.S1_at--747--9911Chr03:11304998..11305022 (25 bp)
TACTGCCACTACTGTATGTACGAGC
LOC_Os03g20090
Os.49619.1.S1_at--237--3731Chr03:11304990..11305014 (25 bp)
CTACTGTATGTACGAGCTGAACTCT
LOC_Os03g20090
Os.49619.1.S1_at--322--4071Chr03:11304978..11305002 (25 bp)
CGAGCTGAACTCTGTAGGATTGACA
LOC_Os03g20090
Os.49619.1.S1_at--253--7931Chr03:11304962..11304986 (25 bp)
GGATTGACAGGATTACTGTACACTT
LOC_Os03g20090
Os.49619.1.S1_at--1026--6551Chr03:11304952..11304976 (25 bp)
GATTACTGTACACTTCTAGAAACCG
LOC_Os03g20090
Os.49619.1.S1_at--398--8731Chr03:11304946..11304970 (25 bp)
TGTACACTTCTAGAAACCGGTAATA
LOC_Os03g20090
Os.49619.1.S1_at--986--7051NONE
GTAATAAAAGCAAAGCTCCGACGCC
NONE
Target Sequence 
CAGGCCGCCGTGTGAAAAGTCAGCACGGCCGCCATGGGAATCCGCCGCGGCGAGCGAGCGCGCGCGCGCGCGACACCCGC
GGGTGCACAACCGCCGGGGACGCGTAGCGGAGCGGAGAAGCGGATTAGAAGAAGGAGAGAAGCTATCTGGGGGATTAGAA
CAAGATTAATCGCCTCACGATGCCATTTTTGGACTCCTAGCTCCCAGACTATTCTAACTCCAGTTCTTTTCCGTTTCTTT
CTCCTTTTTTTACTTCCTAGGGTAAAAAAAAAGAAGTTAAAGTGTAGCCGTTATACTAGTGTTGATGCTGCTGTTACTAA
AGTTTGTCCGTTAAATTTTACTCATTCTTTTTGAGTAAATACAGTACTGCCACTACTGTATGTACGAGCTGAACTCTGTA
GGATTGACAGGATTACTGTACACTTCTAGAAACCGGTAATAAAAGCAAAGCTCCGACGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49619.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis