Browse Element(s) Details


OsAffx.25158.1.S1_at

Description tigr:9631.m01993
TID=OsAffx.25158.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2011011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20100Os.5261.1.S1_a_at11/113+11330276..1133456630S ribosomal protein S1, chloroplast precursor, putative, expressed
LOC_Os03g20110OsAffx.25158.1.S1_at11/113+11339199..11339450hypothetical protein
LOC_Os03g20120Os.11323.1.S1_at11/113+11346033..11347735galactinol synthase 3, putative, expressed
LOC_Os03g20140NANA3+11352172..11355543transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g20150OsAffx.25160.1.S1_at2/113+11361946..11364415hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25158.1.S1_at--438--1271Chr03:11339396..11339420 (25 bp)
AGATCGGAAATTTGGATGGGCTCAC
LOC_Os03g20110
OsAffx.25158.1.S1_at--696--10731Chr03:11339385..11339409 (25 bp)
TTGGATGGGCTCACGGAAGTTTTTC
LOC_Os03g20110
OsAffx.25158.1.S1_at--287--8311Chr03:11339378..11339402 (25 bp)
GGCTCACGGAAGTTTTTCCTTGATC
LOC_Os03g20110
OsAffx.25158.1.S1_at--700--4311Chr03:11339361..11339385 (25 bp)
CCTTGATCTTTATCGCAACGCGGGT
LOC_Os03g20110
OsAffx.25158.1.S1_at--50--531Chr03:11339350..11339374 (25 bp)
ATCGCAACGCGGGTCGCGAGGTAAA
LOC_Os03g20110
OsAffx.25158.1.S1_at--510--6151Chr03:11339333..11339357 (25 bp)
GAGGTAAACTCGGACATTCTTTTCG
LOC_Os03g20110
OsAffx.25158.1.S1_at--779--9831Chr03:11339329..11339353 (25 bp)
TAAACTCGGACATTCTTTTCGTGGT
LOC_Os03g20110
OsAffx.25158.1.S1_at--617--8131Chr03:11339322..11339346 (25 bp)
GGACATTCTTTTCGTGGTTCCAGAC
LOC_Os03g20110
OsAffx.25158.1.S1_at--1139--7891Chr03:11339307..11339331 (25 bp)
GGTTCCAGACCATGATTGTGATTTC
LOC_Os03g20110
OsAffx.25158.1.S1_at--929--31Chr03:11339254..11339317 (25 bp)
ATTGTGATTTCGTGTATTGCCGCGC
LOC_Os03g20110
OsAffx.25158.1.S1_at--652--191Chr03:11339248..11339311 (25 bp)
ATTTCGTGTATTGCCGCGCGTGCAA
LOC_Os03g20110
Target Sequence 
AGATCGGAAATTTGGATGGGCTCACGGAAGTTTTTCCTTGATCTTTATCGCAACGCGGGTCGCGAGGTAAACTCGGACAT
TCTTTTCGTGGTTCCAGACCATGATTGTGATTTCGTGTATTGCCGCGCGTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25158.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis