Browse Element(s) Details


Os.11329.1.S1_at

Description gb:AK070019.1
DB_XREF= gi:32980043
TID=Os.11329.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11329 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023039B14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023039B14, full insert sequence.
FL= gb:AK059187.1 gb:AK070019.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2418011/11DNAJ heat shock N-terminal domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g24160OsAffx.13948.1.S1_at11/114+13791068..13792295hypothetical protein
LOC_Os04g24170Os.8059.1.S1_at11/114+13796968..13805493RNA recognition motif family protein, expressed
LOC_Os04g24180Os.11329.1.S1_at11/114+13810029..13816528DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os04g24190OsAffx.28985.2.S1_at11/114+13819076..13821680hypothetical protein
LOC_Os04g24190OsAffx.28985.2.S1_x_at11/114+13819076..13821680hypothetical protein
LOC_Os04g24190OsAffx.27547.1.S1_x_at1/114+13819076..13821680hypothetical protein
LOC_Os04g24200OsAffx.26123.1.S1_at11/114+13822043..13824201hypothetical protein
LOC_Os04g24210NANA4+13829988..13833948retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g24220Os.27036.1.S1_at11/114+13838508..13843546Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11329.1.S1_at--1158--7031Chr04:13816017..13816041 (25 bp)
GTAATGGGCAAGTTCCAAGCCCCGG
LOC_Os04g24180
Os.11329.1.S1_at--613--6131Chr04:13816044..13816068 (25 bp)
GAGGGCACTCACAACCTGACTTCCT
LOC_Os04g24180
Os.11329.1.S1_at--61--2071Chr04:13816062..13816086 (25 bp)
ACTTCCTTCTGTTTGTGCGACGCAT
LOC_Os04g24180
Os.11329.1.S1_at--814--991Chr04:13816091..13816115 (25 bp)
AGGATGTGACACCAAGACCAGCTTG
LOC_Os04g24180
Os.11329.1.S1_at--633--1711Chr04:13816107..13816131 (25 bp)
ACCAGCTTGAAGTTGAAGGTCCTGA
LOC_Os04g24180
Os.11329.1.S1_at--1133--3351Chr04:13816136..13816160 (25 bp)
CAGCCGGGCAGGAACAAGAGGTCAT
LOC_Os04g24180
Os.11329.1.S1_at--1106--7111Chr04:13816156..13816180 (25 bp)
GTCATGTGGCTGAAGAAGGCCCAGT
LOC_Os04g24180
Os.11329.1.S1_at--356--5711Chr04:13816233..13816257 (25 bp)
GACTACGAGAGCGAGTACAGCGATG
LOC_Os04g24180
Os.11329.1.S1_at--818--8031Chr04:13816302..13816326 (25 bp)
GGAGTAGCCCACCAAAAGGCAAACT
LOC_Os04g24180
Os.11329.1.S1_at--400--8731Chr04:13816443..13816467 (25 bp)
TGTCAACTTATAGAGCAATCGGCGA
LOC_Os04g24180
Os.11329.1.S1_at--499--5191Chr04:13816457..13816481 (25 bp)
GCAATCGGCGATAGCTACCAAAGTT
LOC_Os04g24180
Target Sequence 
GTAATGGGCAAGTTCCAAGCCCCGGCCGAGGGCACTCACAACCTGACTTCCTTCTGTTTGTGCGACGCATGGATAGGATG
TGACACCAAGACCAGCTTGAAGTTGAAGGTCCTGAAGCGCAGCCGGGCAGGAACAAGAGGTCATGTGGCTGAAGAAGGCC
CAGTGGCAGAGGATGGTATTGAGGAAGAAGAAGAGGAGGAAGAAGAGGAGTACGACGACTACGAGAGCGAGTACAGCGAT
GACGAGGAGGATGAGAAGAGCAAAGGAAAGGGTAAGGTCGCGAACGGAGTAGCCCACCAAAAGGCAAACTCCGATATAGA
TTCTGGCAGTGATGATTGATATAGTACCTTGAGTTGTCCAACCATAGACACTTAACATCGTTGTTTTTGCCCTTTGTGCA
CCCTGTTGAAACTTGAACATATCAGTTGTCAACTTATAGAGCAATCGGCGATAGCTACCAAAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11329.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis