Browse Element(s) Details


Os.11342.1.S1_at

Description gb:AK103205.1
DB_XREF= gi:32988414
TID=Os.11342.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11342 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033122E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033122E01, full insert sequence.
FL= gb:AK103205.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0439011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04350OsAffx.4717.1.S1_at10/116+1849165..1852812expressed protein
LOC_Os06g04350Os.51695.1.S1_at2/116+1849165..1852812expressed protein
LOC_Os06g04360Os.51695.1.S1_at10/116+1856524..1860054expressed protein
LOC_Os06g04370Os.54353.1.S1_at11/116+1863558..1867212leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os06g04380Os.6080.1.S1_at11/116+1871647..1874910Glycine cleavage T-protein containing protein, expressed
LOC_Os06g04390Os.11342.1.S1_at11/116+1875621..1879228expressed protein
LOC_Os06g04390OsAffx.16554.1.S1_at1/116+1875621..1879228expressed protein
LOC_Os06g04400OsAffx.27453.1.S1_at11/116+1883183..1883512hypothetical protein
LOC_Os06g04410OsAffx.4718.1.S1_at11/116+1890152..1891189hypothetical protein
LOC_Os06g04420OsAffx.4719.1.S1_at11/116+1892930..1893307Lipoxygenase 2, putative
LOC_Os06g04430OsAffx.15260.1.S1_at11/116+1896434..1896853hypothetical protein
LOC_Os06g04440OsAffx.27454.1.S1_at11/116+1898595..1899626hypothetical protein
LOC_Os06g04450Os.7031.1.S1_at11/116+1899883..1907931SNARE-interacting protein KEULE, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11342.1.S1_at--562--5271Chr06:1877434..1877458 (25 bp)
GAATGCTAGGCATCACTTGGCTGGC
LOC_Os06g04390
Os.11342.1.S1_at--446--8951Chr06:1876111..1876130 (20 bp)
TGAACCAGGTAACCGTGGCACCAGT
LOC_Os06g04390
Os.11342.1.S1_at--226--1091Chr06:1876089..1876113 (25 bp)
AGTGGACGTGGCAGGCAATCCGCTT
LOC_Os06g04390
Os.11342.1.S1_at--921--5571Chr06:1876003..1876027 (25 bp)
GAAATCACGTGTCATACCAATCTCC
LOC_Os06g04390
Os.11342.1.S1_at--924--7931Chr06:1875974..1875998 (25 bp)
GGATTTCTCTTATACATCTACGGAT
LOC_Os06g04390
Os.11342.1.S1_at--1007--2711Chr06:1875924..1875948 (25 bp)
AAGCAGCAAGATTCAGGTCCAGAGA
LOC_Os06g04390
Os.11342.1.S1_at--1059--6911Chr06:1875777..1875801 (25 bp)
GTATGTGCTGCCTTTCGATCTGTAG
LOC_Os06g04390
Os.11342.1.S1_at--570--751Chr06:1875744..1875768 (25 bp)
ATGTATGATACGCTGTCACCACGTT
LOC_Os06g04390
Os.11342.1.S1_at--717--1691Chr06:1875727..1875751 (25 bp)
ACCACGTTGCTGTTTTGCTCATGGG
LOC_Os06g04390
Os.11342.1.S1_at--360--10811Chr06:1875682..1875706 (25 bp)
TTGTAAATGCCTACGTTTCGCTCTA
LOC_Os06g04390
Os.11342.1.S1_at--911--4811Chr06:1875663..1875687 (25 bp)
GCTCTACTTGTGTGTTTGTCCGGAA
LOC_Os06g04390
Target Sequence 
GAATGCTAGGCATCACTTGGCTGGCTTGAACCAAAATGCTGGTACATCTAATAATAATGAACCAGGTAACCGTGGCACCA
GTGGACGTGGCAGGCAATCCGCTTGGGGTTGGGCTCTTCCTGGAAGAGAGCAAGGCCGTGATCAAAGACGGAACGGGGAA
CGACCGAAATCACGTGTCATACCAATCTCCTAAAGGATTTCTCTTATACATCTACGGATCGAATCAGTAAACTGCTAGTT
GTGAAAGCAGCAAGATTCAGGTCCAGAGAATTTAATTAGGTTCAGGTGAATAGTCCTGATTCCTGAATGTCCCGAGTGTC
CCCTACGACCTCGTGTGTCTGTATGGTGTAATCTGTATTGTGTACCGGAAACTGTAAAAACGCTGTCGAGGGTATGTGCT
GCCTTTCGATCTGTAGCAGCACGAATGTATGATACGCTGTCACCACGTTGCTGTTTTGCTCATGGGGAAAACTGAAAACA
CGGTTCTTGTAAATGCCTACGTTTCGCTCTACTTGTGTGTTTGTCCGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11342.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis