Browse Element(s) Details


Os.11348.1.S1_at

Description gb:AK066667.1
DB_XREF= gi:32976685
TID=Os.11348.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11348 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013074P11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013074P11, full insert sequence.
FL= gb:AK066667.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3348011/11histone deacetylase 1A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33420Os.8884.2.S1_x_at10/114+20041598..20043702DNA-binding protein S1FA1, putative, expressed
LOC_Os04g33420Os.8884.1.S1_at9/114+20041598..20043702DNA-binding protein S1FA1, putative, expressed
LOC_Os04g33410OsAffx.30013.3.S1_x_at11/114+20046043..20048220retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g33410OsAffx.30013.3.S1_at11/114+20046043..20048220retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g33410OsAffx.30013.2.S1_at4/114+20046043..20048220retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g33410OsAffx.30013.1.S1_x_at3/114+20046043..20048220retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g33410OsAffx.30013.5.S1_x_at2/114+20046043..20048220retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g33400OsAffx.14112.1.S1_at11/114+20048830..20050740F-box domain containing protein, expressed
LOC_Os04g33460Os.4179.1.S1_at1/114+20052404..200559361,4-alpha-glucan branching enzyme IIB, chloroplast precursor, putative, expressed
LOC_Os04g33470Os.16109.1.S1_at11/114+20057837..20062556calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os04g33480Os.11348.1.S1_at11/114+20065154..20068438histone deacetylase 1A, putative, expressed
LOC_Os04g33490OsAffx.14113.1.S1_s_at11/114+20069030..20071908alkaline/neutral invertase, putative, expressed
LOC_Os04g33490OsAffx.14113.1.S1_at8/114+20069030..20071908alkaline/neutral invertase, putative, expressed
LOC_Os04g33500NANA4+20072158..20075122Protein kinase domain containing protein
LOC_Os04g33510Os.5803.1.S1_at10/114+20088776..20092096expressed protein
LOC_Os04g33520Os.49614.1.S1_at11/114+20092973..20094589Root cap family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009861biological_processjasmonic acid and ethylene-dependent systemic resistance
GO:0016441biological_processposttranscriptional gene silencing
GO:0016575biological_processhistone deacetylation
GO:0005634cellular_componentnucleus
GO:0004407molecular_functionhistone deacetylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11348.1.S1_at--1058--6071Chr04:20067551..20067575 (25 bp)
GAGTTTGCGGGCCATACAACATGCG
LOC_Os04g33480
Os.11348.1.S1_at--766--2491Chr04:20067568..20067592 (25 bp)
AACATGCGCCTGGTGTTCAGATGCA
LOC_Os04g33480
Os.11348.1.S1_at--301--1331Chr04:20067758..20067780 (23 bp)
AGAGGTTCCACCAGATTTTTATATC
LOC_Os04g33480
Os.11348.1.S1_at--1085--5451Chr04:20067814..20068037 (25 bp)
GAACGTGTAGATCAGCATACCCAAG
LOC_Os04g33480
Os.11348.1.S1_at--1152--4951Chr04:20068027..20068051 (25 bp)
GCATACCCAAGACAAGCAGATTCAT
LOC_Os04g33480
Os.11348.1.S1_at--1159--2311Chr04:20068145..20068169 (25 bp)
AAAGTCTGGTGCTGTTGCGCGGTTT
LOC_Os04g33480
Os.11348.1.S1_at--205--6691Chr04:20068158..20068182 (25 bp)
GTTGCGCGGTTTAACAGCGTTAGGT
LOC_Os04g33480
Os.11348.1.S1_at--780--7711Chr04:20068180..20068204 (25 bp)
GGTGGGAAATACTGTCAATTGACTT
LOC_Os04g33480
Os.11348.1.S1_at--96--291Chr04:20068232..20068256 (25 bp)
ATAGTGCGTGTACGTTCCTACTTTT
LOC_Os04g33480
Os.11348.1.S1_at--1143--1791Chr04:20068364..20068388 (25 bp)
ACCCGGCGTATGTGGTTATCAGGTT
LOC_Os04g33480
Os.11348.1.S1_at--687--331Chr04:20068381..20068405 (25 bp)
ATCAGGTTGGACCTACTCTCAACGT
LOC_Os04g33480
Target Sequence 
GAGTTTGCGGGCCATACAACATGCGCCTGGTGTTCAGATGCAAGAGGTTCCACCAGATTTTTATATCCCAGATATTGATG
AAGATGAGCTGGATCCTGATGAACGTGTAGATCAGCATACCCAAGACAAGCAGATTCATCGCGATGACGAGTACTATGAA
GGTGACAACGACAATGATCATGAGGACGGGGCCCGTTGAAAAAGGTTCTTTGTATGATGAAACTGGATAGAGAAAGTCTG
GTGCTGTTGCGCGGTTTAACAGCGTTAGGTGGGAAATACTGTCAATTGACTTGTTAGGATCTAACACCTTNNNNTGNATA
TAGTGCGTGTACGTTCCTACTTTTTAATNAGTTACATATGCTANTTGCATGCAGAGATTGCAANNTNNNANNNNNNNNNA
ANNNNNNNNNGNNNNNGGNNNCNNNCATTTTTCCTATCTTTTTTTGTTTAAACCCGGCGTATGTGGTTATCAGGTTGGAC
CTACTCTCAACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11348.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis