Browse Element(s) Details


OsAffx.14112.1.S1_at

Description tigr:9632.m03197
TID=OsAffx.14112.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3340011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33370NANA4+20023956..20025929Cytochrome P450 77A2, putative, expressed
LOC_Os04g33380NANA4+20027552..20028265hypothetical protein
LOC_Os04g33450Os.11335.1.S1_at11/114+20033867..20035688expressed protein
LOC_Os04g33440Os.13884.1.S1_at11/114+20037246..20039093DNA-binding protein S1FA2, putative, expressed
LOC_Os04g33430NANA4+20039498..20039863hypothetical protein
LOC_Os04g33420Os.8884.2.S1_x_at10/114+20041598..20043702DNA-binding protein S1FA1, putative, expressed
LOC_Os04g33420Os.8884.1.S1_at9/114+20041598..20043702DNA-binding protein S1FA1, putative, expressed
LOC_Os04g33410OsAffx.30013.3.S1_x_at11/114+20046043..20048220retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g33410OsAffx.30013.3.S1_at11/114+20046043..20048220retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g33410OsAffx.30013.2.S1_at4/114+20046043..20048220retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g33410OsAffx.30013.1.S1_x_at3/114+20046043..20048220retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g33410OsAffx.30013.5.S1_x_at2/114+20046043..20048220retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g33400OsAffx.14112.1.S1_at11/114+20048830..20050740F-box domain containing protein, expressed
LOC_Os04g33460Os.4179.1.S1_at1/114+20052404..200559361,4-alpha-glucan branching enzyme IIB, chloroplast precursor, putative, expressed
LOC_Os04g33470Os.16109.1.S1_at11/114+20057837..20062556calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os04g33480Os.11348.1.S1_at11/114+20065154..20068438histone deacetylase 1A, putative, expressed
LOC_Os04g33490OsAffx.14113.1.S1_s_at11/114+20069030..20071908alkaline/neutral invertase, putative, expressed
LOC_Os04g33490OsAffx.14113.1.S1_at8/114+20069030..20071908alkaline/neutral invertase, putative, expressed
LOC_Os04g33500NANA4+20072158..20075122Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14112.1.S1_at--625--7471Chr04:20049431..20049455 (25 bp)
GTGTGTCATGAACCACCTCAACAGC
LOC_Os04g33400
OsAffx.14112.1.S1_at--10--4651Chr04:20049408..20049432 (25 bp)
GCGTCCGACTGGAAAGCAAAGTTCA
LOC_Os04g33400
OsAffx.14112.1.S1_at--904--6751Chr04:20049388..20049412 (25 bp)
GTTCACAACATCTACATGCTTGAAT
LOC_Os04g33400
OsAffx.14112.1.S1_at--595--10271Chr04:20049364..20049388 (25 bp)
TTTGCATGTTTTCTCCTTGCTAGAG
LOC_Os04g33400
OsAffx.14112.1.S1_at--957--10591Chr04:20049354..20049378 (25 bp)
TTCTCCTTGCTAGAGCACAGGTGCT
LOC_Os04g33400
OsAffx.14112.1.S1_at--949--1031Chr04:20049336..20049360 (25 bp)
AGGTGCTGCAGCTCATGACGATTCA
LOC_Os04g33400
OsAffx.14112.1.S1_at--987--5751Chr04:20049320..20049344 (25 bp)
GACGATTCAGTCTAAGGTGTTCAGC
LOC_Os04g33400
OsAffx.14112.1.S1_at--1091--10731Chr04:20049282..20049306 (25 bp)
TTGCAGGTCAGCAAGCTCTGCTCAA
LOC_Os04g33400
OsAffx.14112.1.S1_at--1088--8451Chr04:20049246..20049270 (25 bp)
TGGCCTCCACAGAAGCTGAGATCGT
LOC_Os04g33400
OsAffx.14112.1.S1_at--102--8531Chr04:20049210..20049234 (25 bp)
TGGAAAGCCATGATCTCGAGCACTT
LOC_Os04g33400
OsAffx.14112.1.S1_at--76--6411Chr04:20049199..20049223 (25 bp)
GATCTCGAGCACTTGAGCTTAGAGC
LOC_Os04g33400
Target Sequence 
GTGTGTCATGAACCACCTCAACAGCGTCCGACTGGAAAGCAAAGTTCACAACATCTACATGCTTGAATTTGCATGTTTTC
TCCTTGCTAGAGCACAGGTGCTGCAGCTCATGACGATTCAGTCTAAGGTGTTCAGCACCCCCCAATGCGTTGCAGGTCAG
CAAGCTCTGCTCAACCAAAGCCACGTGGCCTCCACAGAAGCTGAGATCGTGTTTGAAGACATGGAAAGCCATGATCTCGA
GCACTTGAGCTTAGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14112.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis