Browse Element(s) Details


Os.11335.1.S1_at

Description gb:AK121434.1
DB_XREF= gi:37991057
TID=Os.11335.1
CNT=38
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11335 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative serine acetyltransferase (P0690B02.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023139O07, full insert sequence.
FL= gb:AK071186.1 gb:AK121434.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3345011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33360Os.52990.2.S1_at11/114+20013242..20014493oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g33370NANA4+20023956..20025929Cytochrome P450 77A2, putative, expressed
LOC_Os04g33380NANA4+20027552..20028265hypothetical protein
LOC_Os04g33450Os.11335.1.S1_at11/114+20033867..20035688expressed protein
LOC_Os04g33440Os.13884.1.S1_at11/114+20037246..20039093DNA-binding protein S1FA2, putative, expressed
LOC_Os04g33430NANA4+20039498..20039863hypothetical protein
LOC_Os04g33420Os.8884.2.S1_x_at10/114+20041598..20043702DNA-binding protein S1FA1, putative, expressed
LOC_Os04g33420Os.8884.1.S1_at9/114+20041598..20043702DNA-binding protein S1FA1, putative, expressed
LOC_Os04g33410OsAffx.30013.3.S1_x_at11/114+20046043..20048220retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g33410OsAffx.30013.3.S1_at11/114+20046043..20048220retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g33410OsAffx.30013.2.S1_at4/114+20046043..20048220retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g33410OsAffx.30013.1.S1_x_at3/114+20046043..20048220retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g33410OsAffx.30013.5.S1_x_at2/114+20046043..20048220retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g33400OsAffx.14112.1.S1_at11/114+20048830..20050740F-box domain containing protein, expressed
LOC_Os04g33460Os.4179.1.S1_at1/114+20052404..200559361,4-alpha-glucan branching enzyme IIB, chloroplast precursor, putative, expressed
LOC_Os04g33470Os.16109.1.S1_at11/114+20057837..20062556calcineurin-like phosphoesterase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11335.1.S1_at--789--1911Chr04:20034754..20034778 (25 bp)
ACGTGGTGAACCGTCAGCTCAAGCC
LOC_Os04g33450
Os.11335.1.S1_at--1068--3751Chr04:20034730..20034754 (25 bp)
CTCTCGGCAAAACCTGCGTCAAGAA
LOC_Os04g33450
Os.11335.1.S1_at--1101--2751Chr04:20034238..20034262 (25 bp)
AAGACGGTCGATTCACTCTACTAGG
LOC_Os04g33450
Os.11335.1.S1_at--705--1251Chr04:20034209..20034233 (25 bp)
AGATAATGTTATCCCCTAGAGGCAT
LOC_Os04g33450
Os.11335.1.S1_at--55--3171Chr04:20034182..20034206 (25 bp)
AATTCCTCTCTGTAATCTCAGTGCC
LOC_Os04g33450
Os.11335.1.S1_at--917--7351Chr04:20034149..20034173 (25 bp)
GTGAAATGTTCACGTGACCCGTTCA
LOC_Os04g33450
Os.11335.1.S1_at--708--5811Chr04:20034134..20034158 (25 bp)
GACCCGTTCATGTTGCTTGTAACTC
LOC_Os04g33450
Os.11335.1.S1_at--583--2791Chr04:20034109..20034133 (25 bp)
AAGAGTGATTCGTTCTCTCTCTTTT
LOC_Os04g33450
Os.11335.1.S1_at--576--731Chr04:20033956..20033980 (25 bp)
ATGTTACGTCGACTCACTTTTGTTC
LOC_Os04g33450
Os.11335.1.S1_at--242--7071Chr04:20033911..20033935 (25 bp)
GTAATGTAATGCGACCAGCCAACCA
LOC_Os04g33450
Os.11335.1.S1_at--409--1751Chr04:20033887..20033911 (25 bp)
ACCTCCATTGTTGTCCTAGCTGAAT
LOC_Os04g33450
Target Sequence 
ACGTGGTGAACCGTCAGCTCAAGCCTCTCGGCAAAACCTGCGTCAAGAAGGAGAAGGAATACAAAGAAATCCTGGAGGCG
TACAACGAGAAGAACAAGGAGAAGGCACTGCTTGTAAACAGGCTAATTGAGCTGGTGAGCGAAAGTGAGAGGATGCGTAT
GAAGAAGCTCGAGGAGCTGAACAAGACGGTCGATTCACTCTACTAGGCGCCAGATAATGTTATCCCCTAGAGGCATATAA
TTCCTCTCTGTAATCTCAGTGCCATGGATTTGTGAAATGTTCACGTGACCCGTTCATGTTGCTTGTAACTCAAGAGTGAT
TCGTTCTCTCTCTTTTTTTTTTCGCCTCTTCTCTCAGTTAATTAATTGGCTTGGGTGTTNNNNGCGTTGTCANNNNNNAN
NAAAANNNANNNANNTAAGCAAGAACATATCATGGAAACAAGGCTAGGAAAAAGAAGGTGAAGGATGTTACGTCGACTCA
CTTTTGTTCTTCCTTTCATTCTGTACAAAGTAATGTAATGCGACCAGCCAACCACCTCCATTGTTGTCCTAGCTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11335.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis