Browse Element(s) Details


Os.13884.1.S1_at

Description gb:AK121205.1
DB_XREF= gi:37990828
TID=Os.13884.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.13884 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023087P18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023087P18, full insert sequence.
FL= gb:AK121205.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3344011/11DNA-binding protein S1FA2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33360Os.52990.2.S1_at11/114+20013242..20014493oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g33370NANA4+20023956..20025929Cytochrome P450 77A2, putative, expressed
LOC_Os04g33380NANA4+20027552..20028265hypothetical protein
LOC_Os04g33450Os.11335.1.S1_at11/114+20033867..20035688expressed protein
LOC_Os04g33440Os.13884.1.S1_at11/114+20037246..20039093DNA-binding protein S1FA2, putative, expressed
LOC_Os04g33430NANA4+20039498..20039863hypothetical protein
LOC_Os04g33420Os.8884.2.S1_x_at10/114+20041598..20043702DNA-binding protein S1FA1, putative, expressed
LOC_Os04g33420Os.8884.1.S1_at9/114+20041598..20043702DNA-binding protein S1FA1, putative, expressed
LOC_Os04g33410OsAffx.30013.3.S1_x_at11/114+20046043..20048220retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g33410OsAffx.30013.3.S1_at11/114+20046043..20048220retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g33410OsAffx.30013.2.S1_at4/114+20046043..20048220retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g33410OsAffx.30013.1.S1_x_at3/114+20046043..20048220retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g33410OsAffx.30013.5.S1_x_at2/114+20046043..20048220retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g33400OsAffx.14112.1.S1_at11/114+20048830..20050740F-box domain containing protein, expressed
LOC_Os04g33460Os.4179.1.S1_at1/114+20052404..200559361,4-alpha-glucan branching enzyme IIB, chloroplast precursor, putative, expressed
LOC_Os04g33470Os.16109.1.S1_at11/114+20057837..20062556calcineurin-like phosphoesterase family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13884.1.S1_at--1059--1211Chr04:20038684..20038708 (25 bp)
AGTTGCAGGTGTTTGGTCCCGGTCA
LOC_Os04g33440
Os.13884.1.S1_at--677--6491Chr04:20037636..20037660 (25 bp)
GATAGTCCTGATTGTGGTCGCGACC
LOC_Os04g33440
Os.13884.1.S1_at--341--4771Chr04:20037606..20037630 (25 bp)
GCTGCTTTTCTTTGTCGGGAACTAC
LOC_Os04g33440
Os.13884.1.S1_at--569--8171Chr04:20037589..20037613 (25 bp)
GGAACTACGCTCTCTATGTGTACGC
LOC_Os04g33440
Os.13884.1.S1_at--265--8991Chr04:20037499..20037523 (25 bp)
TGAAGCAAGGTGTCTCTGCCCCAGG
LOC_Os04g33440
Os.13884.1.S1_at--1024--5351Chr04:20037469..20037493 (25 bp)
GAAGAGAGCCACCAGTTATGATGTT
LOC_Os04g33440
Os.13884.1.S1_at--628--8811Chr04:20037442..20037466 (25 bp)
TGATTTGATTCAGACGACCCTCTTC
LOC_Os04g33440
Os.13884.1.S1_at--947--5811Chr04:20037427..20037451 (25 bp)
GACCCTCTTCGCTTGTTAGAAAACA
LOC_Os04g33440
Os.13884.1.S1_at--1111--5431Chr04:20037386..20037410 (25 bp)
GAACCGCAGTGCTTACAGTTACTAT
LOC_Os04g33440
Os.13884.1.S1_at--481--7411Chr04:20037340..20037364 (25 bp)
GTGATTCTCCGTTATTGGACAACTT
LOC_Os04g33440
Os.13884.1.S1_at--827--7291Chr04:20037274..20037298 (25 bp)
GTGCTGTTCGTATTTTTAAGGCTTT
LOC_Os04g33440
Target Sequence 
AGTTGCAGGTGTTTGGTCCCGGTCANCCATGGCGGATCAGTTCGCGGACTCTGCGAACAATGTAGTCATTGAGGAGGTCA
ACAAGGGACTGAACCCTGGAATGATAGTCCTGATTGTGGTCGCGACCTTCCTGCTGCTTTTCTTTGTCGGGAACTACGCT
CTCTATGTGTACGCTCAGAAGACGCTTCCTCCTCGCAAAAAGAAGCCAGTCTCGAAGAAGAAGATGAAGAGGGAAAAACT
GAAGCAAGGTGTCTCTGCCCCAGGAGAGTGAAGAGAGCCACCAGTTATGATGTTGCTGATTTGATTCAGACGACCCTCTT
CGCTTGTTAGAAAACAGGATATATATCAGCTGGAACCGCAGTGCTTACAGTTACTATGTTCTGTATAAGCTTTATATAGT
GATTCTCCGTTATTGGACAACTTATTTCAGCAAACGGTTGAACCTTAGCCCAANTTGATCTATTGTGCTGTTCGTATTTT
TAAGGCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13884.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis