Browse Element(s) Details


Os.52990.2.S1_at

Description gb:AK110729.1
DB_XREF= gi:32995938
TID=Os.52990.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52990 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-170-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-170-E08, full insert sequence.
FL= gb:AK110729.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3336011/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33330Os.50591.2.S1_x_at11/114+19999435..20002011expressed protein
LOC_Os04g33330Os.50591.1.S1_at11/114+19999435..20002011expressed protein
LOC_Os04g33340OsAffx.26306.1.S1_s_at11/114+20002945..20003596hypothetical protein
LOC_Os04g33340OsAffx.26306.2.S1_at5/114+20002945..20003596hypothetical protein
LOC_Os04g33350Os.52915.1.S1_at4/114+20008218..20008718hypothetical protein
LOC_Os04g33350OsAffx.12985.3.S1_x_at1/114+20008218..20008718hypothetical protein
LOC_Os04g33360Os.52990.2.S1_at11/114+20013242..20014493oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g33370NANA4+20023956..20025929Cytochrome P450 77A2, putative, expressed
LOC_Os04g33380NANA4+20027552..20028265hypothetical protein
LOC_Os04g33450Os.11335.1.S1_at11/114+20033867..20035688expressed protein
LOC_Os04g33440Os.13884.1.S1_at11/114+20037246..20039093DNA-binding protein S1FA2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009686biological_processgibberellic acid biosynthesis
GO:0009693biological_processethylene biosynthesis
GO:0009815molecular_function1-aminocyclopropane-1-carboxylate oxidase activity
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0045543molecular_functiongibberellin 2-beta-dioxygenase activity
GO:0045544molecular_functiongibberellin 20-oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52990.2.S1_at--271--9131Chr04:20014235..20014268 (25 bp)
TGCGACGGCTACCAGGTAGTAACAA
LOC_Os04g33360
Os.52990.2.S1_at--444--7051Chr04:20014262..20014286 (25 bp)
GTAACAAGGTAGAAGATGTGCTGCT
LOC_Os04g33360
Os.52990.2.S1_at--684--8691Chr04:20014278..20014302 (25 bp)
TGTGCTGCTGCATTGTGTAGGATAT
LOC_Os04g33360
Os.52990.2.S1_at--252--231Chr04:20014299..20014323 (25 bp)
ATATTGTAGTACAAGGTCCATGGTA
LOC_Os04g33360
Os.52990.2.S1_at--545--2211Chr04:20014309..20014333 (25 bp)
ACAAGGTCCATGGTACCAATTGGTA
LOC_Os04g33360
Os.52990.2.S1_at--183--6891Chr04:20014331..20014355 (25 bp)
GTATTTGCAATGATTTTCTGGCTAA
LOC_Os04g33360
Os.52990.2.S1_at--108--6551Chr04:20014342..20014366 (25 bp)
GATTTTCTGGCTAATTGCTTGTCTG
LOC_Os04g33360
Os.52990.2.S1_at--975--9451Chr04:20014347..20014371 (25 bp)
TCTGGCTAATTGCTTGTCTGAATAA
LOC_Os04g33360
Os.52990.2.S1_at--1103--9811Chr04:20014369..20014393 (25 bp)
TAAAAGGAGTATACATGGCATGATA
LOC_Os04g33360
Os.52990.2.S1_at--530--3131Chr04:20014397..20014421 (25 bp)
AATTTTCTAGCCAACATTACATGTA
LOC_Os04g33360
Os.52990.2.S1_at--272--9791Chr04:20014469..20014493 (25 bp)
TAAGATCATCGCATCATTTTACATT
LOC_Os04g33360
Target Sequence 
TGCGACGGCTACCAGGTAGTAACAAGGTAGAAGATGTGCTGCTGCATTGTGTAGGATATTGTAGTACAAGGTCCATGGTA
CCAATTGGTATTTGCAATGATTTTCTGGCTAATTGCTTGTCTGAATAAAAGGAGTATACATGGCATGATAATAAATTTTC
TAGCCAACATTACATGTAAAGATAAAAGGGAGAAATGATTGAAATCAATACTCAATACTATATTTTAAGATCATCGCATC
ATTTTACATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52990.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis