Browse Element(s) Details


OsAffx.12985.3.S1_x_at

Description tigr:9634.m03950
TID=OsAffx.12985.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cytochrome p450 93a3 (ec 1.14.-.-) (p450 cp5). (soybean)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4107011/11Cytochrome P450 family protein, expressed
LOC_Os04g333501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41030OsAffx.28033.1.S1_x_at11/116+24501393..24506550secreted protein, putative, expressed
LOC_Os06g41030OsAffx.28033.1.S1_s_at11/116+24501393..24506550secreted protein, putative, expressed
LOC_Os06g41030Os.5721.1.A1_at9/116+24501393..24506550secreted protein, putative, expressed
LOC_Os06g41040OsAffx.5072.1.S1_at11/116+24509258..24511552pentatricopeptide, putative, expressed
LOC_Os06g41050Os.49902.1.S1_at11/116+24515545..24518259expressed protein
LOC_Os06g41060Os.4952.1.S1_at11/116+24521244..24526835bHLH transcription factor, putative, expressed
LOC_Os06g41060OsAffx.15870.1.S1_at10/116+24521244..24526835bHLH transcription factor, putative, expressed
LOC_Os06g41070OsAffx.12985.3.S1_x_at11/116+24531077..24532738Cytochrome P450 family protein, expressed
LOC_Os06g41080OsAffx.19542.3.S1_x_at6/116+24541392..24551972retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g41080Os.49954.1.S1_at1/116+24541392..24551972retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g41080OsAffx.9949.1.S1_at1/116+24541392..24551972retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g41090Os.53583.1.S1_at11/116+24554320..24556976C2 domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0009813biological_processflavonoid biosynthesis
GO:0016711molecular_functionflavonoid 3'-monooxygenase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12985.3.S1_x_at--522--8711Chr06:24531651..24531675 (25 bp)
TGTCAGAGCTAATCAACAACCCGCC
LOC_Os06g41070
OsAffx.12985.3.S1_x_at--847--9291Chr06:24531621..24531645 (25 bp)
TCCGCAAGCTACAGGCGGAGCTCGA
LOC_Os06g41070
OsAffx.12985.3.S1_x_at--49--9331Chr06:24531573..24531597 (25 bp)
TCGCCGACGAGTCGGACATCCCGAG
LOC_Os06g41070
OsAffx.12985.3.S1_x_at--484--9311Chr06:24531546..24531570 (25 bp)
TCCCGTACCTGCAGGCCGTGGCGAA
LOC_Os06g41070
OsAffx.12985.3.S1_x_at--887--7551Chr06:24531434..24531458 (25 bp)
GGGCGCCACGGTGTTCGTGAACGTG
LOC_Os06g41070
OsAffx.12985.3.S1_x_at--1009--9411Chr06:24531420..24531444 (25 bp)
TCGTGAACGTGTGGGCGATCGGCCG
LOC_Os06g41070
OsAffx.12985.3.S1_x_at--538--6011Chr06:24531355..24531379 (25 bp)
GAGAGGTTCGTCTCCGGCGGCGGCG
LOC_Os06g41070
OsAffx.12985.3.S1_x_at--566--7231Chr06:24531248..24531272 (25 bp)
GTCGCTGGCGATGCTGGTGGTGCAG
LOC_Os06g41070
OsAffx.12985.3.S1_x_at--410--8471Chr06:24531216..24531240 (25 bp)
TGGCCGCCATGGTGCAGTGCTTCGA
LOC_Os06g41070
OsAffx.12985.3.S1_x_at--240--9051Chr06:24531204..24531228 (25 bp)
TGCAGTGCTTCGAGTGGAGCCCCGT
LOC_Os06g41070
OsAffx.12985.3.S1_x_at--536--8353Chr06:3777996..3778460 (25 bp)
GGCGGCGCGCCGGTGGACATGGAGG
NONE
Target Sequence 
TGTCAGAGCTAATCAACAACCCGCCCGTCCTCCGCAAGCTACAGGCGGAGCTCGACGCGGTGGTCGGCGGCGCGCGGCTC
GCCGACGAGTCGGACATCCCGAGCCTCCCGTACCTGCAGGCCGTGGCGAAGGAGACGCTGCGGCTGCACCCGACGGGCCC
GCTCGTGGTGCGGCGCTCGCTGGAGCGCGCCACGGTGGCCGGCTACGACGTCCCGGCGGGCGCCACGGTGTTCGTGAACG
TGTGGGCGATCGGCCGCGACGCGGCGTGGTGGCCGGAGCCGACGGCGTTCCGGCCGGAGAGGTTCGTCTCCGGCGGCGGC
GGCGGCGGGACGGCGGCGGACGTGCGCGGGCAGCACTTCCACCTGCTGCCGTTCGGGTCGGGGCGGCGGATCTGCCCCGG
CGCGTCGCTGGCGATGCTGGTGGTGCAGGCGGCGCTGGCCGCCATGGTGCAGTGCTTCGAGTGGAGCCCCGTCGGCGGCG
CGCCGGTGGACATGGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12985.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis