Browse Element(s) Details


Os.53583.1.S1_at

Description gb:AK073403.1
DB_XREF= gi:32983426
TID=Os.53583.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53583 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033042F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033042F02, full insert sequence.
FL= gb:AK073403.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4109011/11C2 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41070OsAffx.12985.3.S1_x_at11/116+24531077..24532738Cytochrome P450 family protein, expressed
LOC_Os06g41080OsAffx.19542.3.S1_x_at6/116+24541392..24551972retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g41080Os.49954.1.S1_at1/116+24541392..24551972retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g41080OsAffx.9949.1.S1_at1/116+24541392..24551972retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g41090Os.53583.1.S1_at11/116+24554320..24556976C2 domain-containing protein, putative, expressed
LOC_Os06g41100Os.50121.1.S1_at10/116+24560308..24567617bZIP transcription factor family protein, expressed
LOC_Os06g41110Os.4849.1.S1_at10/116+24573302..24581104tubulin-specific chaperone C, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53583.1.S1_at--631--4511Chr06:24554880..24554904 (25 bp)
GCCGCACATGGACACGAAGATGTCG
LOC_Os06g41090
Os.53583.1.S1_at--566--9311Chr06:24554806..24554830 (25 bp)
TCCCGACGTCGAGGCAGCAGGACGT
LOC_Os06g41090
Os.53583.1.S1_at--781--5811Chr06:24554672..24554696 (25 bp)
GACCCGAGGGCGACGTGCCTCTTCG
LOC_Os06g41090
Os.53583.1.S1_at--518--3991Chr06:24554498..24554522 (25 bp)
CGGGCGGACAGCATGCTCTGAGCAA
LOC_Os06g41090
Os.53583.1.S1_at--163--8891Chr06:24554480..24554504 (25 bp)
TGAGCAAGACGACGTACGGCTTCAA
LOC_Os06g41090
Os.53583.1.S1_at--475--5771Chr06:24554473..24554497 (25 bp)
GACGACGTACGGCTTCAAAATGTTT
LOC_Os06g41090
Os.53583.1.S1_at--125--1311Chr06:24554430..24554454 (25 bp)
AGATGAGATTTCGTTTTGTTTTTGT
LOC_Os06g41090
Os.53583.1.S1_at--1061--8871Chr06:24554364..24554388 (25 bp)
TGAGAATTTCCCTCCCATGTAACTA
LOC_Os06g41090
Os.53583.1.S1_at--779--9311Chr06:24554356..24554380 (25 bp)
TCCCTCCCATGTAACTATGTTTGTC
LOC_Os06g41090
Os.53583.1.S1_at--1110--7911Chr06:24554327..24554351 (25 bp)
GGATTCTAATAAGTGCATGCCTGGA
LOC_Os06g41090
Os.53583.1.S1_at--737--9751Chr06:24554321..24554345 (25 bp)
TAATAAGTGCATGCCTGGATTCTAA
LOC_Os06g41090
Target Sequence 
GCCGCACATGGACACGAAGATGTCGTGGGCGGAGGCGGTGCACCCCGACGAGCTGGACGAGGAGTTCGACACGTTCCCGA
CGTCGAGGCAGCAGGACGTGGTGTACATGAGGTACGACCGGCTGAGGAGCGTCGCCGGGAGGATACAGACGGTGGTCGGC
GACATGGCGACGCAGGGGGAGAGGCTGCAGTCGCTGCTGGGGTGGCGGGACCCGAGGGCGACGTGCCTCTTCGTCGTCTT
CTGCCTCGTCGCCGCCGTCGTGCTCTACGTGACGCCGTTCAGGGTGNTGGCGCTCGTCGCCGGNCTCTACCTGCTCCGCC
ACCCGCGGTTCCGCAGCCGCCTGCCNGCGGTGCCCAGCAACTTCTTCCGCCGCCTGCCGTCGCGGGCGGACAGCATGCTC
TGAGCAAGACGACGTACGGCTTCAAAATGTTTGAAATTTTCAGTCCAAAAAGATGAGATTTCGTTTTGTTTTTGTTTTNG
TNTACATTTTGCTGATGAATTTGGACACTTGAGATNTGAGAATTTCCCTCCCATGTAACTATGTTTGTCTCGNGGATTCT
AATAAGTGCATGCCTGGATTCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53583.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis