Browse Element(s) Details


Os.4849.1.S1_at

Description gb:AK070178.1
DB_XREF= gi:32980202
TID=Os.4849.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.4849 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023046O09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023046O09, full insert sequence.
FL= gb:AK070178.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4111010/11tubulin-specific chaperone C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41080OsAffx.19542.3.S1_x_at6/116+24541392..24551972retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g41080Os.49954.1.S1_at1/116+24541392..24551972retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g41080OsAffx.9949.1.S1_at1/116+24541392..24551972retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g41090Os.53583.1.S1_at11/116+24554320..24556976C2 domain-containing protein, putative, expressed
LOC_Os06g41100Os.50121.1.S1_at10/116+24560308..24567617bZIP transcription factor family protein, expressed
LOC_Os06g41110Os.4849.1.S1_at10/116+24573302..24581104tubulin-specific chaperone C, putative, expressed
LOC_Os06g41120Os.9546.1.S1_at9/116+24585199..24585856expressed protein
LOC_Os06g41120Os.9546.1.S1_x_at9/116+24585199..24585856expressed protein
LOC_Os06g41130NANA6+24588711..24589621hypothetical protein
LOC_Os06g41140NANA6+24602659..24603334hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4849.1.S1_at--532--2731Chr06:24579408..24579432 (25 bp)
AAGAATTGGCATCTGCCCTTCATGC
LOC_Os06g41110
Os.4849.1.S1_at--343--2911NONE
AAGGACTGGCTATACGCTTCAGGAA
NONE
Os.4849.1.S1_at--877--5591Chr06:24580633..24580657 (25 bp)
GAAATATCCGCCAGCTCTACTGTTT
LOC_Os06g41110
Os.4849.1.S1_at--577--2711Chr06:24580671..24580695 (25 bp)
AAGCATCTGGCTTTCTTCAACATTC
LOC_Os06g41110
Os.4849.1.S1_at--426--3511Chr06:24580701..24580725 (25 bp)
CATGTGCTTATATGCTCCTTGAAGA
LOC_Os06g41110
Os.4849.1.S1_at--746--2811Chr06:24580722..24580746 (25 bp)
AAGATTATGTACCTTCACCCGATTC
LOC_Os06g41110
Os.4849.1.S1_at--812--571Chr06:24580762..24580786 (25 bp)
ATCCAACCGCATTGTCCAAGCTGAC
LOC_Os06g41110
Os.4849.1.S1_at--511--2691Chr06:24580779..24580803 (25 bp)
AAGCTGACTCTCCAACTGAGCCTGA
LOC_Os06g41110
Os.4849.1.S1_at--1076--2351Chr06:24580858..24580882 (25 bp)
AAAGCGCGATGCCTATTTTTGCCAA
LOC_Os06g41110
Os.4849.1.S1_at--924--831Chr06:24580918..24580942 (25 bp)
ATGGACTGCACCTTGGGTTTTTGTT
LOC_Os06g41110
Os.4849.1.S1_at--1015--10351Chr06:24581022..24581046 (25 bp)
TTTTTCGCTTATCTGATGAGGCCAT
LOC_Os06g41110
Target Sequence 
AAGAATTGGCATCTGCCCTTCATGCCCAATTCAAGGACTGGCTATACGCTTCAGGAAATATCCGCCAGCTCTACTGTTTG
CAAGGGGAATAAAAGCATCTGGCTTTCTTCAACATTCATTCGCATGTGCTTATATGCTCCTTGAAGATTATGTACCTTCA
CCCGATTCCCTTCAACTCCGTCCATCCAACCGCATTGTCCAAGCTGACTCTCCAACTGAGCCTGATCCACCTGTTCTTCA
AGCCATTGTTGTTTTCTTTTTAGGGAAGAATGTAAAGAAAAAGCGCGATGCCTATTTTTGCCAATTAATTTTGATCATTC
GGTATGTGATGATTGGTGGATGGACTGCACCTTGGGTTTTTGTTGTTGTCTTTATTTATATATCCTCGATAAAATNTGCG
AGGATGAATAGGGATTACTCCTTTTCTTTTGAAAATAAACATTTTTTTCGCTTATCTGATGAGGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4849.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis