Browse Element(s) Details


Os.50121.1.S1_at

Description gb:AK119909.1
DB_XREF= gi:37989532
TID=Os.50121.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50121 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-183-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-183-A10, full insert sequence.
FL= gb:AK119909.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4110010/11bZIP transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41080OsAffx.19542.3.S1_x_at6/116+24541392..24551972retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g41080Os.49954.1.S1_at1/116+24541392..24551972retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g41080OsAffx.9949.1.S1_at1/116+24541392..24551972retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g41090Os.53583.1.S1_at11/116+24554320..24556976C2 domain-containing protein, putative, expressed
LOC_Os06g41100Os.50121.1.S1_at10/116+24560308..24567617bZIP transcription factor family protein, expressed
LOC_Os06g41110Os.4849.1.S1_at10/116+24573302..24581104tubulin-specific chaperone C, putative, expressed
LOC_Os06g41120Os.9546.1.S1_at9/116+24585199..24585856expressed protein
LOC_Os06g41120Os.9546.1.S1_x_at9/116+24585199..24585856expressed protein
LOC_Os06g41130NANA6+24588711..24589621hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50121.1.S1_at--1025--1171Chr06:24561126..24561150 (25 bp)
AGTACGGCAGCTACAGCAACCTGCA
LOC_Os06g41100
Os.50121.1.S1_at--118--431Chr06:24560667..24561094 (25 bp)
ATCTTCCTACGACAGGCGGATGAGG
LOC_Os06g41100
Os.50121.1.S1_at--124--3931Chr06:24560507..24560531 (25 bp)
CGGCCGCCGGCTAGAAATCAATTGA
LOC_Os06g41100
Os.50121.1.S1_at--9--3091Chr06:24560492..24560516 (25 bp)
AATCAATTGAATCGGCTTAGCTTAG
LOC_Os06g41100
Os.50121.1.S1_at--419--4891Chr06:24560478..24560502 (25 bp)
GCTTAGCTTAGGTTATTAGCCACAC
LOC_Os06g41100
Os.50121.1.S1_at--237--6791Chr06:24560467..24560491 (25 bp)
GTTATTAGCCACACACGCACACATG
LOC_Os06g41100
Os.50121.1.S1_at--99--1851Chr06:24560453..24560477 (25 bp)
ACGCACACATGCAAAGAGTAGCTAA
LOC_Os06g41100
Os.50121.1.S1_at--760--6951Chr06:24560436..24560460 (25 bp)
GTAGCTAAGGCTATATAGCGACATG
LOC_Os06g41100
Os.50121.1.S1_at--366--6011Chr06:24560377..24560401 (25 bp)
GAGAGCATATGCACCATCTTAACGA
LOC_Os06g41100
Os.50121.1.S1_at--616--7911Chr06:24560343..24560367 (25 bp)
GGTTGTATGTGTATTCGATCGGGAA
LOC_Os06g41100
Os.50121.1.S1_at--611--2451Chr06:24560308..24560332 (25 bp)
AAAATAGACTCGACGTGTTGATCTT
NONE
Target Sequence 
AGTACGGCAGCTACAGCAACCTGCAGCTCGCCATGGACAAGCTCGCCAACCTCGCCATCTTCCTACGACAGGCGGATGAG
GAGAGGATGCGGACGCTGCACGCGCTGCGGCGGATGCTGACGGTGAGGCAGGCGGCGCGCTGCTTCGTCGCCGTCGACGA
CTACTTCGGCCGCCTCCGCGCGCTCGCCTTGTTCTGGACCACCACCCGGCCGCACCCGGCCGCCGGCTAGAAATCAATTG
AATCGGCTTAGCTTAGGTTATTAGCCACACACGCACACATGCAAAGAGTAGCTAAGGCTATATAGCGACATGTAAGAGGG
AGACGAGGAGTAGATATATAGCTAGAGAGAGCATATGCACCATCTTAACGATCAAAATAAGGTTGTATGTGTATTCGATC
GGGAAAATAGTTTTAAAAATAGACTCGACGTGTTGATCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50121.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis