Browse Element(s) Details


Os.4952.1.S1_at

Description gb:AK070970.1
DB_XREF= gi:32980993
TID=Os.4952.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4952 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023066J03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023066J03, full insert sequence.
FL= gb:AK070970.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4106011/11bHLH transcription factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41020OsAffx.28032.2.S1_at10/116+24494063..24499901expressed protein
LOC_Os06g41030OsAffx.28033.1.S1_x_at11/116+24501393..24506550secreted protein, putative, expressed
LOC_Os06g41030OsAffx.28033.1.S1_s_at11/116+24501393..24506550secreted protein, putative, expressed
LOC_Os06g41030Os.5721.1.A1_at9/116+24501393..24506550secreted protein, putative, expressed
LOC_Os06g41040OsAffx.5072.1.S1_at11/116+24509258..24511552pentatricopeptide, putative, expressed
LOC_Os06g41050Os.49902.1.S1_at11/116+24515545..24518259expressed protein
LOC_Os06g41060Os.4952.1.S1_at11/116+24521244..24526835bHLH transcription factor, putative, expressed
LOC_Os06g41060OsAffx.15870.1.S1_at10/116+24521244..24526835bHLH transcription factor, putative, expressed
LOC_Os06g41070OsAffx.12985.3.S1_x_at11/116+24531077..24532738Cytochrome P450 family protein, expressed
LOC_Os06g41080OsAffx.19542.3.S1_x_at6/116+24541392..24551972retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g41080Os.49954.1.S1_at1/116+24541392..24551972retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g41080OsAffx.9949.1.S1_at1/116+24541392..24551972retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4952.1.S1_at--950--4851Chr06:24523762..24523783 (22 bp)
GCTATGATCTAGCAAGCTCTGGAGC
LOC_Os06g41060
Os.4952.1.S1_at--941--4831Chr06:24521703..24521727 (25 bp)
GCTAAAGACGGAGCTGTGAGCCTGT
LOC_Os06g41060
Os.4952.1.S1_at--683--2711Chr06:24521653..24521677 (25 bp)
AAGCAGGTCAGCAGAGCAAGCCAAA
LOC_Os06g41060
Os.4952.1.S1_at--1159--3271Chr06:24521628..24521652 (25 bp)
CAAACATACGTGAGCTGTGGACAAT
LOC_Os06g41060
Os.4952.1.S1_at--851--3831Chr06:24521527..24521551 (25 bp)
CTGCTGTGGATGGTTGGCAACGTCT
LOC_Os06g41060
Os.4952.1.S1_at--664--8231Chr06:24521512..24521536 (25 bp)
GGCAACGTCTTGTGCAGTGCAGCAG
LOC_Os06g41060
Os.4952.1.S1_at--726--3451Chr06:24521490..24521514 (25 bp)
CAGTGCGGTGCATGGGACTTTCATT
LOC_Os06g41060
Os.4952.1.S1_at--759--3671Chr06:24521473..24521497 (25 bp)
CTTTCATTGATTTTGGAGGCCGGAT
LOC_Os06g41060
Os.4952.1.S1_at--986--6211Chr06:24521458..24521482 (25 bp)
GAGGCCGGATTCTGAGACGATGTAC
LOC_Os06g41060
Os.4952.1.S1_at--429--4751Chr06:24521293..24521317 (25 bp)
GCTGATGTATTCTTGGTGTATGCCT
LOC_Os06g41060
Os.4952.1.S1_at--479--7751Chr06:24521279..24521303 (25 bp)
GGTGTATGCCTGACTACGATGGTTT
LOC_Os06g41060
Target Sequence 
GCTATGATCTAGCAAGCTCTGGAGCNCCGGCCCAGACAGGCAACAAGCTAAAGACGGAGCTGTGAGCCTGTGACCAACGG
TGNTGGTAGTGATAGCAAGCAGGTCAGCAGAGCAAGCCAAACAAACATACGTGAGCTGTGGACAATGGCGGCTGGNTGTC
AGGAGAGCTAGCTAGCTAGCTAGGCGTGAGCTGTGGACTGACGGCTGCTGCTGCTGCTGCTGCTGCTGTGGATGGTTGGC
AACGTCTTGTGCAGTGCAGCAGTGCGGTGCATGGGACTTTCATTGATTTTGGAGGCCGGATTCTGAGACGATGTACATAT
GGAATGCAAGATATAGAGAGATACTGTTGTTGCTGTTGTTGGAGACTCTTGGAGCTGGAGGTGATGGATATGGAGGTTTT
ACTGCTGCNATCNTTTTTTGTAGAGATGAGCGAGAGATACTGTGGNTTCTTTTCTTGCTGATGTATTCTTGGTGTATGCC
TGACTACGATGGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4952.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis