Browse Element(s) Details


OsAffx.28032.2.S1_at

Description tigr:9634.m03944
TID=OsAffx.28032.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4102010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40980OsAffx.19542.3.S1_x_at5/116+24467648..24471121retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g40990NANA6+24481081..24481806expressed protein
LOC_Os06g41000OsAffx.15869.1.S1_at11/116+24485126..24485512hypothetical protein
LOC_Os06g41010Os.28384.1.S1_at11/116+24490982..24493135AN1-like Zinc finger family protein, expressed
LOC_Os06g41020OsAffx.28032.2.S1_at10/116+24494063..24499901expressed protein
LOC_Os06g41030OsAffx.28033.1.S1_x_at11/116+24501393..24506550secreted protein, putative, expressed
LOC_Os06g41030OsAffx.28033.1.S1_s_at11/116+24501393..24506550secreted protein, putative, expressed
LOC_Os06g41030Os.5721.1.A1_at9/116+24501393..24506550secreted protein, putative, expressed
LOC_Os06g41040OsAffx.5072.1.S1_at11/116+24509258..24511552pentatricopeptide, putative, expressed
LOC_Os06g41050Os.49902.1.S1_at11/116+24515545..24518259expressed protein
LOC_Os06g41060Os.4952.1.S1_at11/116+24521244..24526835bHLH transcription factor, putative, expressed
LOC_Os06g41060OsAffx.15870.1.S1_at10/116+24521244..24526835bHLH transcription factor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28032.2.S1_at--25--1631Chr06:24494826..24494850 (25 bp)
AGCTGGTCACGCTCACGCAGGAGTC
LOC_Os06g41020
OsAffx.28032.2.S1_at--93--1891NONE
ACGATCGATCCGTTCGGCCTGCCGG
NONE
OsAffx.28032.2.S1_at--54--9171Chr06:24494547..24494571 (25 bp)
TGCGCGCCGGGAACAGCTCGAGCAC
LOC_Os06g41020
OsAffx.28032.2.S1_at--502--8171Chr06:24494538..24494562 (25 bp)
GGAACAGCTCGAGCACGCTGTTCAA
LOC_Os06g41020
OsAffx.28032.2.S1_at--66--4171Chr06:24494381..24494405 (25 bp)
CGCCGCAGCCGCAGGATTCGAGCAG
LOC_Os06g41020
OsAffx.28032.2.S1_at--547--891Chr06:24494340..24494364 (25 bp)
AGGCCGAGCCACTGCGGCGGTATCA
LOC_Os06g41020
OsAffx.28032.2.S1_at--924--9131Chr06:24494328..24494352 (25 bp)
TGCGGCGGTATCATGCGATCAGCTT
LOC_Os06g41020
OsAffx.28032.2.S1_at--807--6891Chr06:24494321..24494345 (25 bp)
GTATCATGCGATCAGCTTCTTCGCC
LOC_Os06g41020
OsAffx.28032.2.S1_at--818--7371Chr06:24494290..24494314 (25 bp)
GTGAGGAGGAGCTTCCTCCTCGAGC
LOC_Os06g41020
OsAffx.28032.2.S1_at--706--9371Chr06:24494271..24494295 (25 bp)
TCGAGCCATTGTTCACCTTGAGGGA
LOC_Os06g41020
OsAffx.28032.2.S1_at--653--11Chr06:24494264..24494288 (25 bp)
ATTGTTCACCTTGAGGGACGAGTTC
LOC_Os06g41020
Target Sequence 
AGCTGGTCACGCTCACGCAGGAGTCCGGCGGGAAGACCATGCTCCTCTCCACCGTGAACGACACCTCCCTGGCGATGCTG
GAGCGGCCCGAGGGCGCCGGCGGCACGGACGCCGCCGTCGCCGCGGCGACGATCGATCCGTTCGGCCTGCCGGGGACGGC
GGTGTCGAACGGCCTCGCCGTGGTGCGCGCCGGGAACAGCTCGAGCACGCTGTTCAACGTCGCGCCGGGGCTCGACGGGA
AGCCCGGCTCCGTCTCGCTCGAGCTCGGGAGCAAGCCGGGGTGCTTCTTGGTCGCCGGCGCCGGCGCGAAGGTGCATGTC
GGCTGCAGGACACGCGGCGGCGCCGCCGCCGCCGCAGCCGCAGGATTCGAGCAGGCGGCGAGCTTCGCGCAGGCCGAGCC
ACTGCGGCGGTATCATGCGATCAGCTTCTTCGCCAGCGGCGTGAGGAGGAGCTTCCTCCTCGAGCCATTGTTCACCTTGA
GGGACGAGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28032.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis