Browse Element(s) Details


OsAffx.15869.1.S1_at

Description tigr:9634.m03941
TID=OsAffx.15869.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4100011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40970OsAffx.28031.1.S1_x_at11/116+24459620..24462919hypothetical protein
LOC_Os06g40980OsAffx.19542.3.S1_x_at5/116+24467648..24471121retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g40990NANA6+24481081..24481806expressed protein
LOC_Os06g41000OsAffx.15869.1.S1_at11/116+24485126..24485512hypothetical protein
LOC_Os06g41010Os.28384.1.S1_at11/116+24490982..24493135AN1-like Zinc finger family protein, expressed
LOC_Os06g41020OsAffx.28032.2.S1_at10/116+24494063..24499901expressed protein
LOC_Os06g41030OsAffx.28033.1.S1_x_at11/116+24501393..24506550secreted protein, putative, expressed
LOC_Os06g41030OsAffx.28033.1.S1_s_at11/116+24501393..24506550secreted protein, putative, expressed
LOC_Os06g41030Os.5721.1.A1_at9/116+24501393..24506550secreted protein, putative, expressed
LOC_Os06g41040OsAffx.5072.1.S1_at11/116+24509258..24511552pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15869.1.S1_at--284--10531Chr06:24485452..24485476 (25 bp)
TTCACCCCTCTGCTATGGTGTCATT
LOC_Os06g41000
OsAffx.15869.1.S1_at--297--3771Chr06:24485445..24485469 (25 bp)
CTCTGCTATGGTGTCATTCTCTCAC
LOC_Os06g41000
OsAffx.15869.1.S1_at--784--10111Chr06:24485439..24485463 (25 bp)
TATGGTGTCATTCTCTCACCACTGT
LOC_Os06g41000
OsAffx.15869.1.S1_at--847--111Chr06:24485430..24485454 (25 bp)
ATTCTCTCACCACTGTCGCGCTTTG
LOC_Os06g41000
OsAffx.15869.1.S1_at--392--1951Chr06:24485419..24485443 (25 bp)
ACTGTCGCGCTTTGCTTCGGCCGTC
LOC_Os06g41000
OsAffx.15869.1.S1_at--862--7231Chr06:24485397..24485421 (25 bp)
GTCGCCGCTCTGACTGGTGCCAATC
LOC_Os06g41000
OsAffx.15869.1.S1_at--975--1871Chr06:24485348..24485372 (25 bp)
ACGATACCACCAGTCTGCTTCGGGA
LOC_Os06g41000
OsAffx.15869.1.S1_at--942--1151Chr06:24485337..24485361 (25 bp)
AGTCTGCTTCGGGACCGCTGTTGCC
LOC_Os06g41000
OsAffx.15869.1.S1_at--312--10631Chr06:24485306..24485330 (25 bp)
TTCGCCACCGGTAGGCGGCAACGGA
LOC_Os06g41000
OsAffx.15869.1.S1_at--244--10051Chr06:24485295..24485319 (25 bp)
TAGGCGGCAACGGAAGCCCGGACGT
LOC_Os06g41000
OsAffx.15869.1.S1_at--539--651Chr06:24485218..24485242 (25 bp)
ATGCAGTGGCTAGGAGATGGTGACG
LOC_Os06g41000
Target Sequence 
TTCACCCCTCTGCTATGGTGTCATTCTCTCACCACTGTCGCGCTTTGCTTCGGCCGTCGCCGCTCTGACTGGTGCCAATC
CTCCGCCACAGTCCCCAATCCACCACGATACCACCAGTCTGCTTCGGGACCGCTGTTGCCTCCGCCTTCGCCACCGGTAG
GCGGCAACGGAAGCCCGGACGTCGAGGGCGTGGCGCTGGCCGACTTCTTCTTCGGCCCCAAGTTGGATGACTTGATGCAG
TGGCTAGGAGATGGTGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15869.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis