Browse Element(s) Details


Os.5721.1.A1_at

Description gb:CR285725
DB_XREF= gi:44672291
DB_XREF=CR285725
CLONE=p869c06p3
TID=Os.5721.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.5721 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T49909 (A.thaliana) T49909 hypothetical protein T24H18.120 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g410309/11secreted protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40990NANA6+24481081..24481806expressed protein
LOC_Os06g41000OsAffx.15869.1.S1_at11/116+24485126..24485512hypothetical protein
LOC_Os06g41010Os.28384.1.S1_at11/116+24490982..24493135AN1-like Zinc finger family protein, expressed
LOC_Os06g41020OsAffx.28032.2.S1_at10/116+24494063..24499901expressed protein
LOC_Os06g41030OsAffx.28033.1.S1_x_at11/116+24501393..24506550secreted protein, putative, expressed
LOC_Os06g41030OsAffx.28033.1.S1_s_at11/116+24501393..24506550secreted protein, putative, expressed
LOC_Os06g41030Os.5721.1.A1_at9/116+24501393..24506550secreted protein, putative, expressed
LOC_Os06g41040OsAffx.5072.1.S1_at11/116+24509258..24511552pentatricopeptide, putative, expressed
LOC_Os06g41050Os.49902.1.S1_at11/116+24515545..24518259expressed protein
LOC_Os06g41060Os.4952.1.S1_at11/116+24521244..24526835bHLH transcription factor, putative, expressed
LOC_Os06g41060OsAffx.15870.1.S1_at10/116+24521244..24526835bHLH transcription factor, putative, expressed
LOC_Os06g41070OsAffx.12985.3.S1_x_at11/116+24531077..24532738Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5721.1.A1_at--451--5571Chr06:24501474..24501498 (25 bp)
GAAAGGCGATCCATAAATATTGTGC
LOC_Os06g41030
Os.5721.1.A1_at--96--4631Chr06:24501469..24501493 (25 bp)
GCGATCCATAAATATTGTGCCGTTC
LOC_Os06g41030
Os.5721.1.A1_at--711--10211Chr06:24501457..24501481 (25 bp)
TATTGTGCCGTTCAATTAGGCCCCA
LOC_Os06g41030
Os.5721.1.A1_at--703--8691Chr06:24501454..24501478 (25 bp)
TGTGCCGTTCAATTAGGCCCCAATT
LOC_Os06g41030
Os.5721.1.A1_at--822--151Chr06:24501443..24501467 (25 bp)
ATTAGGCCCCAATTGATTGCTGTCG
LOC_Os06g41030
Os.5721.1.A1_at--1082--871Chr06:24501440..24501464 (25 bp)
AGGCCCCAATTGATTGCTGTCGTGG
LOC_Os06g41030
Os.5721.1.A1_at--744--4211Chr06:24501437..24501461 (25 bp)
CCCCAATTGATTGCTGTCGTGGAAT
LOC_Os06g41030
Os.5721.1.A1_at--629--71Chr06:24501428..24501452 (25 bp)
ATTGCTGTCGTGGAATCTTGGAGAA
LOC_Os06g41030
Os.5721.1.A1_at--188--10271Chr06:24501402..24501425 (24 bp)
TTTGTTGCTTCTATTCTATCAACTG
LOC_Os06g41030
Os.5721.1.A1_at--291--4911Chr06:24501338..24501419 (25 bp)
GCTTCTATTCTATCAACTGTAGTAG
NONE
Os.5721.1.A1_at--29--9751NONE
TAGTATAACAGTTCTACTACCGTCC
NONE
Target Sequence 
GAAAGGCGATCCATAAATATTGTGCCGTTCAATTAGGCCCCAATTGATTGCTGTCGTGGAATCTTGGAGAATNTTTGTTG
CTTCTATTCTATCAACTGTAGTAGTATAACAGTTCTACTACCGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5721.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis