Browse Element(s) Details


OsAffx.5072.1.S1_at

Description tigr:9634.m03946
TID=OsAffx.5072.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to selenium-binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4104011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41000OsAffx.15869.1.S1_at11/116+24485126..24485512hypothetical protein
LOC_Os06g41010Os.28384.1.S1_at11/116+24490982..24493135AN1-like Zinc finger family protein, expressed
LOC_Os06g41020OsAffx.28032.2.S1_at10/116+24494063..24499901expressed protein
LOC_Os06g41030OsAffx.28033.1.S1_x_at11/116+24501393..24506550secreted protein, putative, expressed
LOC_Os06g41030OsAffx.28033.1.S1_s_at11/116+24501393..24506550secreted protein, putative, expressed
LOC_Os06g41030Os.5721.1.A1_at9/116+24501393..24506550secreted protein, putative, expressed
LOC_Os06g41040OsAffx.5072.1.S1_at11/116+24509258..24511552pentatricopeptide, putative, expressed
LOC_Os06g41050Os.49902.1.S1_at11/116+24515545..24518259expressed protein
LOC_Os06g41060Os.4952.1.S1_at11/116+24521244..24526835bHLH transcription factor, putative, expressed
LOC_Os06g41060OsAffx.15870.1.S1_at10/116+24521244..24526835bHLH transcription factor, putative, expressed
LOC_Os06g41070OsAffx.12985.3.S1_x_at11/116+24531077..24532738Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031425biological_processchloroplast RNA processing
GO:0031426biological_processpolycistronic mRNA processing
GO:0009507cellular_componentchloroplast
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5072.1.S1_at--520--10711Chr06:24509819..24509843 (25 bp)
TTGCAGAGTCCATGCTAACGTTCAT
LOC_Os06g41040
OsAffx.5072.1.S1_at--943--3731Chr06:24509805..24509829 (25 bp)
CTAACGTTCATGTTGGTGAGCTTGT
LOC_Os06g41040
OsAffx.5072.1.S1_at--858--1011Chr06:24509613..24509637 (25 bp)
AGGTTATTCACACCTTCCATTCAAG
LOC_Os06g41040
OsAffx.5072.1.S1_at--847--3631Chr06:24509600..24509624 (25 bp)
CTTCCATTCAAGTGAGCGGTTCCAT
LOC_Os06g41040
OsAffx.5072.1.S1_at--686--5871Chr06:24509587..24509611 (25 bp)
GAGCGGTTCCATCCCAGTAAGAAAG
LOC_Os06g41040
OsAffx.5072.1.S1_at--75--2351Chr06:24509524..24509548 (25 bp)
AAAGCAGCTGGCTTTGTTCCAGACT
LOC_Os06g41040
OsAffx.5072.1.S1_at--709--10791Chr06:24509511..24509535 (25 bp)
TTGTTCCAGACTTGAGTTGTGTGCT
LOC_Os06g41040
OsAffx.5072.1.S1_at--351--1431Chr06:24509462..24509486 (25 bp)
AGAACGCATGCTTCTTGGTCACAGT
LOC_Os06g41040
OsAffx.5072.1.S1_at--895--6591Chr06:24509415..24509439 (25 bp)
GATTGATGAACACTCCTCCAGGATT
LOC_Os06g41040
OsAffx.5072.1.S1_at--557--9251Chr06:24509402..24509426 (25 bp)
TCCTCCAGGATTGACTATCCGGGTT
LOC_Os06g41040
OsAffx.5072.1.S1_at--933--431Chr06:24509370..24509394 (25 bp)
ATCTTCGCATATGTGTTGATTGCCA
LOC_Os06g41040
Target Sequence 
TTGCAGAGTCCATGCTAACGTTCATGTTGGTGAGCTTGTTGCTCAGAAGCTTCTGGAAATGGAGCCAGAAAATGCTGGCA
ATTATGTAATACTTTCTAACATTTATGCTGCTGCTGGGATGTGGAAAGATGTTTTCAAAGTGAGGAAGCTAATGTTGGAG
AAGACAGTGACCAAGGAACCAGGGCAGAGCTGGATAATTCTTGACAAGGTTATTCACACCTTCCATTCAAGTGAGCGGTT
CCATCCCAGTAAGAAAGACATAAATGCCAAGATAAAAGAGATATTTGTCGATATCAAAGCAGCTGGCTTTGTTCCAGACT
TGAGTTGTGTGCTGCATGATGTTGATGATGAGCAAAAAGAACGCATGCTTCTTGGTCACAGTGAGAAGCTGGCAATAACT
TTTGGATTGATGAACACTCCTCCAGGATTGACTATCCGGGTTATGAAGAATCTTCGCATATGTGTTGATTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5072.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis