Browse Element(s) Details


OsAffx.28033.1.S1_x_at

Description tigr:9634.m03945
TID=OsAffx.28033.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4103011/11secreted protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40990NANA6+24481081..24481806expressed protein
LOC_Os06g41000OsAffx.15869.1.S1_at11/116+24485126..24485512hypothetical protein
LOC_Os06g41010Os.28384.1.S1_at11/116+24490982..24493135AN1-like Zinc finger family protein, expressed
LOC_Os06g41020OsAffx.28032.2.S1_at10/116+24494063..24499901expressed protein
LOC_Os06g41030OsAffx.28033.1.S1_x_at11/116+24501393..24506550secreted protein, putative, expressed
LOC_Os06g41030OsAffx.28033.1.S1_s_at11/116+24501393..24506550secreted protein, putative, expressed
LOC_Os06g41030Os.5721.1.A1_at9/116+24501393..24506550secreted protein, putative, expressed
LOC_Os06g41040OsAffx.5072.1.S1_at11/116+24509258..24511552pentatricopeptide, putative, expressed
LOC_Os06g41050Os.49902.1.S1_at11/116+24515545..24518259expressed protein
LOC_Os06g41060Os.4952.1.S1_at11/116+24521244..24526835bHLH transcription factor, putative, expressed
LOC_Os06g41060OsAffx.15870.1.S1_at10/116+24521244..24526835bHLH transcription factor, putative, expressed
LOC_Os06g41070OsAffx.12985.3.S1_x_at11/116+24531077..24532738Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28033.1.S1_x_at--635--5891Chr06:24501967..24501991 (25 bp)
GAGCTCGCCACCAGGCCGGGATGCT
LOC_Os06g41030
OsAffx.28033.1.S1_x_at--1106--2931Chr06:24501904..24501928 (25 bp)
AAGGCTCAGGTCAGCTGCCGGAAAC
LOC_Os06g41030
OsAffx.28033.1.S1_x_at--1120--2751Chr06:24501858..24501882 (25 bp)
AAGACGACGACGACACGGCGTTCCG
LOC_Os06g41030
OsAffx.28033.1.S1_x_at--889--5871Chr06:24501660..24501684 (25 bp)
GAGCCCAGCCTTGCCATGGACAGAA
LOC_Os06g41030
OsAffx.28033.1.S1_x_at--338--5651Chr06:24501642..24501666 (25 bp)
GACAGAATGACAGATCACCAAGCTT
LOC_Os06g41030
OsAffx.28033.1.S1_x_at--783--1271Chr06:24501631..24501655 (25 bp)
AGATCACCAAGCTTGTCCATGGCTT
LOC_Os06g41030
OsAffx.28033.1.S1_x_at--573--7251Chr06:24501617..24501641 (25 bp)
GTCCATGGCTTACACTACCTGTAAT
LOC_Os06g41030
OsAffx.28033.1.S1_x_at--760--1151Chr06:24501570..24501594 (25 bp)
AGTACCTAAGACCTGATTACCTAAT
LOC_Os06g41030
OsAffx.28033.1.S1_x_at--335--3131Chr06:24501548..24501572 (25 bp)
AATTAACAATCTTCACCATGGCCGT
LOC_Os06g41030
OsAffx.28033.1.S1_x_at--468--1731Chr06:24501534..24501558 (25 bp)
ACCATGGCCGTGATGATTCAATCAA
LOC_Os06g41030
OsAffx.28033.1.S1_x_at--48--3091Chr06:24501515..24501539 (25 bp)
AATCAATGCGTGCATGTGTGCTCGT
LOC_Os06g41030
Target Sequence 
GAGCTCGCCACCAGGCCGGGATGCTTCGTGGCAGCCCCCACCACGGCCTACCTCGCCGGCGCCAAGGCTCAGGTCAGCTG
CCGGAAACCCACCGCCGCCGGCGGCGGCGAAGACGACGACGACACGGCGTTCCGCCGCGCCGCAAGCTTCACCCAGGCGG
CACCTCTCCGTCTCTACCACCCGCTGAGCTTCTCGGCGACGGGCACCGACAGGAACTTCCTCCTGGAGCCATTGCAGAGC
CTCCAGGACGAGTTCTACACCGTCTACTTCAACGTCCTCACCAAGTGATCCACCGCCATGTGACAGCGAGCCCAGCCTTG
CCATGGACAGAATGACAGATCACCAAGCTTGTCCATGGCTTACACTACCTGTAATGGATATGAAATTAAACATAGTTAGT
ACCTAAGACCTGATTACCTAATTAACAATCTTCACCATGGCCGTGATGATTCAATCAATGCGTGCATGTGTGCTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28033.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis