Browse Element(s) Details


Os.28384.1.S1_at

Description gb:AK060008.1
DB_XREF= gi:32970026
TID=Os.28384.1
CNT=435
FEA=FLmRNA
TIER=FL+Stack
STK=12
UG=Os.28384 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-309-A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-302-C08, full insert sequence.
FL= gb:AK062342.1 gb:AK104605.1 gb:AY345599.2 gb:AK104175.1 gb:AK060008.1 gb:AK069720.1 gb:AK104562.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4101011/11AN1-like Zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40980OsAffx.19542.3.S1_x_at5/116+24467648..24471121retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g40990NANA6+24481081..24481806expressed protein
LOC_Os06g41000OsAffx.15869.1.S1_at11/116+24485126..24485512hypothetical protein
LOC_Os06g41010Os.28384.1.S1_at11/116+24490982..24493135AN1-like Zinc finger family protein, expressed
LOC_Os06g41020OsAffx.28032.2.S1_at10/116+24494063..24499901expressed protein
LOC_Os06g41030OsAffx.28033.1.S1_x_at11/116+24501393..24506550secreted protein, putative, expressed
LOC_Os06g41030OsAffx.28033.1.S1_s_at11/116+24501393..24506550secreted protein, putative, expressed
LOC_Os06g41030Os.5721.1.A1_at9/116+24501393..24506550secreted protein, putative, expressed
LOC_Os06g41040OsAffx.5072.1.S1_at11/116+24509258..24511552pentatricopeptide, putative, expressed
LOC_Os06g41050Os.49902.1.S1_at11/116+24515545..24518259expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28384.1.S1_at--913--2271Chr06:24492387..24492411 (25 bp)
AAATCGGTGCTCCACTTGTCGGAAG
LOC_Os06g41010
Os.28384.1.S1_at--242--8591Chr06:24492417..24492441 (25 bp)
TGGTCTTACCGGATTCAACTGCCGA
LOC_Os06g41010
Os.28384.1.S1_at--170--6271Chr06:24492440..24492464 (25 bp)
GATGTGGCAACTTGTACTGCGCAAT
LOC_Os06g41010
Os.28384.1.S1_at--313--5191Chr06:24492460..24492484 (25 bp)
GCAATGCACCGCTATTCCGATAAGC
LOC_Os06g41010
Os.28384.1.S1_at--1138--8931Chr06:24492486..24492510 (25 bp)
TGACTGCCAGTTTGACTATCGGACC
LOC_Os06g41010
Os.28384.1.S1_at--927--8091Chr06:24492506..24492530 (25 bp)
GGACCGCTGCTAGGGATGCTATTGC
LOC_Os06g41010
Os.28384.1.S1_at--1161--2591Chr06:24492596..24492620 (25 bp)
AACGAAGCGTCACAATCTGCGGTCT
LOC_Os06g41010
Os.28384.1.S1_at--537--9251Chr06:24492656..24492680 (25 bp)
TCCTTTCATGTTGGCTGCTACAATC
LOC_Os06g41010
Os.28384.1.S1_at--754--4831Chr06:24492672..24492696 (25 bp)
GCTACAATCTAGTTGTTCGGCATTT
LOC_Os06g41010
Os.28384.1.S1_at--127--9731Chr06:24492723..24492747 (25 bp)
TCAAGAACCCTCATCTCTGGTCAGT
LOC_Os06g41010
Os.28384.1.S1_at--865--10111Chr06:24492789..24492813 (25 bp)
TATGATCGTCTTGCGCTGACGGTAT
LOC_Os06g41010
Target Sequence 
AAATCGGTGCTCCACTTGTCGGAAGAGGGNNTTGGTCTTACCGGATTCAACTGCCGATGTGGCAACTTGTACTGCGCAAT
GCACCGCTATTCCGATAAGCATGACTGCCAGTTTGACTATCGGACCGCTGCTAGGGATGCTATTGCCAAGGCTAATCCGG
TGGTGAAGGCGGAGAAACTTGACAAAATTTAGGGGTTTCATATGGTTGGTGAACGAAGCGTCACAATCTGCGGTCTTCAT
CATCCATCTTTGCTGCATTATCCATGCCTTTTCCTTTCATGTTGGCTGCTACAATCTAGTTGTTCGGCATTTGTGATGCA
TGGCACACCACGGCAGCTTCAAGAACCCTCATCTCTGGTCAGTCCGAATGGTTTGCATGTTGGCTATGTTGTGTAAGCTT
TATTTATGATCGTCTTGCGCTGACGGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28384.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis