Browse Element(s) Details


Os.50591.2.S1_x_at

Description gb:AK121980.1
DB_XREF= gi:37991603
TID=Os.50591.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50591 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033065K23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033108L11, full insert sequence.
FL= gb:AK121980.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3333011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33390Os.5186.1.S1_at11/114+19982191..19983852prephenate dehydratase family protein, expressed
LOC_Os04g33390OsAffx.29486.2.S1_x_at1/114+19982191..19983852prephenate dehydratase family protein, expressed
LOC_Os04g33390Os.36927.2.S1_x_at1/114+19982191..19983852prephenate dehydratase family protein, expressed
LOC_Os04g33330Os.50591.2.S1_x_at11/114+19999435..20002011expressed protein
LOC_Os04g33330Os.50591.1.S1_at11/114+19999435..20002011expressed protein
LOC_Os04g33340OsAffx.26306.1.S1_s_at11/114+20002945..20003596hypothetical protein
LOC_Os04g33340OsAffx.26306.2.S1_at5/114+20002945..20003596hypothetical protein
LOC_Os04g33350Os.52915.1.S1_at4/114+20008218..20008718hypothetical protein
LOC_Os04g33350OsAffx.12985.3.S1_x_at1/114+20008218..20008718hypothetical protein
LOC_Os04g33360Os.52990.2.S1_at11/114+20013242..20014493oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g33370NANA4+20023956..20025929Cytochrome P450 77A2, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50591.2.S1_x_at--434--9091Chr04:20001694..20001718 (25 bp)
TGCTCAGATCGACGGCGACGCATAA
LOC_Os04g33330
Os.50591.2.S1_x_at--389--4951Chr04:20001675..20001699 (25 bp)
GCATAAGCCTACCTCGCTGGTTACA
LOC_Os04g33330
Os.50591.2.S1_x_at--491--8411Chr04:20001648..20001671 (24 bp)
GGCCGAAACCTCATCTGGATTTGGC
LOC_Os04g33330
Os.50591.2.S1_x_at--767--7751Chr04:20000991..20001015 (25 bp)
GGTGATTCCCATCCCAAATCAATGA
LOC_Os04g33330
Os.50591.2.S1_x_at--579--5191Chr04:20000915..20000939 (25 bp)
GCAATATCGCACCAGACTGCTGTTA
LOC_Os04g33330
Os.50591.2.S1_x_at--168--5731Chr04:20000901..20000925 (25 bp)
GACTGCTGTTATCCTGAATCAATCT
LOC_Os04g33330
Os.50591.2.S1_x_at--336--2431Chr04:20000846..20000870 (25 bp)
AAAAGCTTCCGGAGGTGTGCTGAAT
LOC_Os04g33330
Os.50591.2.S1_x_at--123--8691Chr04:20000831..20000855 (25 bp)
TGTGCTGAATTTCGCTCTTCTGGAG
LOC_Os04g33330
Os.50591.2.S1_x_at--1067--9751Chr04:20000687..20000711 (25 bp)
TAATGCAGTCTTGCTACAGCACCGT
LOC_Os04g33330
Os.50591.2.S1_x_at--243--2171Chr04:20000622..20000646 (25 bp)
ACACCATGTTGGTTGATCATCTCAG
LOC_Os04g33330
Os.50591.2.S1_x_at--813--10251Chr04:20000547..20000571 (25 bp)
TTTGATTTAACTCCAGCCAGATTTG
LOC_Os04g33330
Target Sequence 
TGCTCAGATCGACGGCGACGCATAAGCCTACCTCGCTGGTTACACCCGGCCGAAACCTCATCTGGATTTGGCACAACGAT
GGGGAACAATCTTGTTTTCAAAAGATCATCATCAGGTGATTCCCATCCCAAATCAATGAATGGGAAGAGAAAATTGGATG
ATCGTATTGAACTAGGGGACAATATGATAAGCAATATCGCACCAGACTGCTGTTATCCTGAATCAATCTACAAAAGGAGA
AGATCAAATCAACAACTTGAAAAGCTTCCGGAGGTGTGCTGAATTTCGCTCTTCTGGAGGTTATTAAATACTAGGCACAA
TTTAGCAAAATTACCTCTGAAAGTTTTGAAGGTACTGCAATGTTAGGCAGCATGACTGGGAGGCGACAACAATGCACTCA
AAAGTCCATTGAAAACGTTAATGCAGTCTTGCTACAGCACCGTGGGATGGTGATAGAGTAACTTGCAGTCAAGTTCGAAT
TTGACACCATGTTGGTTGATCATCTCAGTGATTGGGTTAGTTTTGCAGTATCATCATTGACAAATTAAGTTCCAAGCTTT
TGATTTAACTCCAGCCAGATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50591.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis