Browse Element(s) Details


Os.52915.1.S1_at

Description gb:AK069886.1
DB_XREF= gi:32979910
TID=Os.52915.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52915 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023040C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023040C05, full insert sequence.
FL= gb:AK069886.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g333504/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33390Os.5186.1.S1_at11/114+19982191..19983852prephenate dehydratase family protein, expressed
LOC_Os04g33390OsAffx.29486.2.S1_x_at1/114+19982191..19983852prephenate dehydratase family protein, expressed
LOC_Os04g33390Os.36927.2.S1_x_at1/114+19982191..19983852prephenate dehydratase family protein, expressed
LOC_Os04g33330Os.50591.2.S1_x_at11/114+19999435..20002011expressed protein
LOC_Os04g33330Os.50591.1.S1_at11/114+19999435..20002011expressed protein
LOC_Os04g33340OsAffx.26306.1.S1_s_at11/114+20002945..20003596hypothetical protein
LOC_Os04g33340OsAffx.26306.2.S1_at5/114+20002945..20003596hypothetical protein
LOC_Os04g33350Os.52915.1.S1_at4/114+20008218..20008718hypothetical protein
LOC_Os04g33350OsAffx.12985.3.S1_x_at1/114+20008218..20008718hypothetical protein
LOC_Os04g33360Os.52990.2.S1_at11/114+20013242..20014493oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g33370NANA4+20023956..20025929Cytochrome P450 77A2, putative, expressed
LOC_Os04g33380NANA4+20027552..20028265hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52915.1.S1_at--325--7731Chr04:20008430..20008454 (25 bp)
GGTGGACATGACGTGGGACCTCCAC
LOC_Os04g33350
Os.52915.1.S1_at--319--10511Chr04:20008509..20008533 (25 bp)
TTCACGTTCCAGACGCGCGGCGCGT
LOC_Os04g33350
Os.52915.1.S1_at--378--5771Chr04:20008538..20008562 (25 bp)
GACGAAGTTCTGGATAGAGGACGAC
LOC_Os04g33350
Os.52915.1.S1_at--771--6391Chr04:20008578..20008602 (25 bp)
GATCTGGAACAATCTCAGCCACCGG
LOC_Os04g33350
Os.52915.1.S1_at--764--5011NONE
GCAGGGATTCTGCTTACTGATCCGA
NONE
Os.52915.1.S1_at--575--10571NONE
TTCTGCTTACTGATCCGAGGTTTCA
NONE
Os.52915.1.S1_at--563--7571Chr04:20008697..20008721 (25 bp)
GGGCGCATCCAAGATCGCTTGATCT
NONE
Os.52915.1.S1_at--632--591Chr04:20008728..20008752 (25 bp)
ATGCCATGAGAGATTCGCCATTCTT
NONE
Os.52915.1.S1_at--1149--6571Chr04:20008739..20008763 (25 bp)
GATTCGCCATTCTTTTTCACTTCTT
NONE
Os.52915.1.S1_at--903--4631Chr04:20008774..20008798 (25 bp)
GCGTTGCTTGGGATTGTAGTATCAA
NONE
Os.52915.1.S1_at--504--2411Chr04:20008797..20008821 (25 bp)
AAAATTCGACAATGGGTTTGGTGCT
NONE
Target Sequence 
GGTGGACATGACGTGGGACCTCCACGGCTGGCTCTTCCACGCGGCCGACCCCTCGCCGGCCTCCTCCTGCGCCGCCGTCT
TCACGTTCCAGACGCGCGGCGCGTCGGAGACGAAGTTCTGGATAGAGGACGACGGCGACGGCGACGACGATCTGGAACAA
TCTCAGCCACCGGCTGCGCCGCGCGGCCCGAAACAGAAGCTGGGCGGCGGCGGCGGCGGCGGCGCTCCGTCGGGGCAGGG
ATTCTGCTTACTGATCCGAGGTTTCAGGGGCGCATCCAAGATCGCTTGATCTGTATAAATGCCATGAGAGATTCGCCATT
CTTTTTCACTTCTTCTTCTTGCTTGCGTTGCTTGGGATTGTAGTATCAAAATTCGACAATGGGTTTGGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52915.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis