Browse Element(s) Details


Os.11356.1.A1_at

Description gb:CB647037
DB_XREF= gi:29642030
DB_XREF=OSJNEb09M16.r
CLONE=OSJNEb09M16
TID=Os.11356.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.11356 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_179531.1 (A.thaliana) putative protein kinase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1267010/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12630OsAffx.10901.1.S1_at3/112+6591946..6594769retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g12640OsAffx.24213.1.S1_at11/112+6595265..6595657hypothetical protein
LOC_Os02g12650Os.11236.1.S1_at11/112+6599222..6606524Peptidase family M1 containing protein, expressed
LOC_Os02g12660Os.15687.2.A1_at11/112+6609459..6613879protein kinase family protein, putative, expressed
LOC_Os02g12660OsAffx.15330.1.S1_x_at1/112+6609459..6613879protein kinase family protein, putative, expressed
LOC_Os02g12670Os.11356.1.A1_at10/112+6616308..6623367protein kinase family protein, putative, expressed
LOC_Os02g12680Os.18933.1.S1_at5/112+6628383..6630103Cytochrome P450 74A3, putative, expressed
LOC_Os02g12690Os.7087.1.S1_at11/112+6637973..6639831Cytochrome P450 74A4, putative, expressed
LOC_Os02g12700Os.52088.1.S1_at11/112+6644227..6645926expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11356.1.A1_at--756--9831Chr02:6622638..6622662 (25 bp)
TAAATGTGCCAAGCCACTTCATCTG
LOC_Os02g12670
Os.11356.1.A1_at--828--5271NONE
GAATGATCCTTATGTGGCTGCTGAT
NONE
Os.11356.1.A1_at--637--8871Chr02:6622844..6622868 (25 bp)
TGATGGGCACACGTATGAGCAACAA
LOC_Os02g12670
Os.11356.1.A1_at--230--5531Chr02:6622889..6622913 (25 bp)
GAAACACAAAGTATCCCCGGTCACA
LOC_Os02g12670
Os.11356.1.A1_at--1088--7071Chr02:6622908..6622932 (25 bp)
GTCACACGGCGAATTCTACCAAATT
LOC_Os02g12670
Os.11356.1.A1_at--1097--10071Chr02:6622931..6622955 (25 bp)
TTTGTCCGTAATCCCAAACCATTCG
LOC_Os02g12670
Os.11356.1.A1_at--321--2371Chr02:6622946..6622970 (25 bp)
AAACCATTCGTTGCGAGCTGCGATA
LOC_Os02g12670
Os.11356.1.A1_at--1015--8191Chr02:6622978..6623002 (25 bp)
GGAAGTCACAATCTGCTCATGCAAA
LOC_Os02g12670
Os.11356.1.A1_at--257--3671Chr02:6623053..6623077 (25 bp)
CTTTGAGTTCTTTATCCGGAGTTTG
LOC_Os02g12670
Os.11356.1.A1_at--1034--3671Chr02:6623262..6623286 (25 bp)
CTTTCAGTTTCTGTGTTGTCTCTCT
LOC_Os02g12670
Os.11356.1.A1_at--207--7171Chr02:6623279..6623303 (25 bp)
GTCTCTCTTCCCTTTTATTTGTAAT
LOC_Os02g12670
Target Sequence 
TAAATGTGCCAAGCCACTTCATCTGCCCTATAATGCAGGAGGTAATGAATGATCCTTATGTGGCTGCTGATGGGCACACG
TATGAGCAACAAGCAATCAAAGCTTGGCTCAAGAAACACAAAGTATCCCCGGTCACACGGCGAATTCTACCAAATTTGTC
CGTAATCCCAAACCATTCGTTGCGAGCTGCGATACAGCAGTGGAAGTCACAATCTGCTCATGCAAAGTCATAAAATGGGC
GTGGAGTTTGTTTCGATATGATTTAACTTTTTTGTTCTTTGAGTTCTTTATCCGGAGTTTGTTTCGATATGATTTAACTT
TTTTGTTCTTTGAGTTCTTTANCCTGTAAATTNGAGTGCAGTTAGGATCTTAGGGAGGAGGGCTGTTGCCGGTAAATAAA
GGTGTTANCCGTGCAAACTATTTAGTNCCGAAATTGAAAAAATTGCAGATATGATTTGTTCTTATAATATGAGTAACATG
TTTCTCTTTCAGTTTCTGTGTTGTCTCTCTTCCCTTTTATTTGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11356.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis