Browse Element(s) Details


Os.11236.1.S1_at

Description gb:AK066996.1
DB_XREF= gi:32977014
TID=Os.11236.1
CNT=37
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.11236 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013089H24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089H24, full insert sequence.
FL= gb:AK060032.1 gb:AK066996.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1265011/11Peptidase family M1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12580Os.10337.2.S1_at11/112+6572766..6577608Serine/threonine protein phosphatase PP2A-3 catalytic subunit, putative, expressed
LOC_Os02g12580Os.10337.1.S1_x_at11/112+6572766..6577608Serine/threonine protein phosphatase PP2A-3 catalytic subunit, putative, expressed
LOC_Os02g12590OsAffx.12007.1.S1_at10/112+6578959..6579539hypothetical protein
LOC_Os02g12600OsAffx.12008.1.S1_x_at11/112+6582328..6587404NOL1/NOP2/sun family protein, expressed
LOC_Os02g12600Os.18147.1.S1_at10/112+6582328..6587404NOL1/NOP2/sun family protein, expressed
LOC_Os02g12610OsAffx.24212.1.S1_at11/112+6587538..6588065Hsp20/alpha crystallin family protein
LOC_Os02g12610OsAffx.24212.1.S1_x_at11/112+6587538..6588065Hsp20/alpha crystallin family protein
LOC_Os02g12620NANA2+6588391..6590160retrotransposon protein, putative, unclassified
LOC_Os02g12630OsAffx.10901.1.S1_at3/112+6591946..6594769retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g12640OsAffx.24213.1.S1_at11/112+6595265..6595657hypothetical protein
LOC_Os02g12650Os.11236.1.S1_at11/112+6599222..6606524Peptidase family M1 containing protein, expressed
LOC_Os02g12660Os.15687.2.A1_at11/112+6609459..6613879protein kinase family protein, putative, expressed
LOC_Os02g12660OsAffx.15330.1.S1_x_at1/112+6609459..6613879protein kinase family protein, putative, expressed
LOC_Os02g12670Os.11356.1.A1_at10/112+6616308..6623367protein kinase family protein, putative, expressed
LOC_Os02g12680Os.18933.1.S1_at5/112+6628383..6630103Cytochrome P450 74A3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009926biological_processauxin polar transport
GO:0005886cellular_componentplasma membrane
GO:0004179molecular_functionmembrane alanyl aminopeptidase activity
GO:0009983molecular_functiontyrosine aminopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11236.1.S1_at--53--8651Chr02:6605892..6605916 (25 bp)
TGGGACTACATTTCAGACACCTTCT
LOC_Os02g12650
Os.11236.1.S1_at--538--8171Chr02:6605919..6605943 (25 bp)
GGAACTCTTCTCACCTATTTCGTTT
LOC_Os02g12650
Os.11236.1.S1_at--890--9671Chr02:6606055..6606074 (20 bp)
TCACCGCTGCGCACCGATGAAATGG
LOC_Os02g12650
Os.11236.1.S1_at--674--3451Chr02:6606184..6606208 (25 bp)
CAGGGCCGAGGCTAACCTGGGCAAT
LOC_Os02g12650
Os.11236.1.S1_at--293--1871Chr02:6606228..6606252 (25 bp)
ACGACCACTGAGACGACCGATCTTT
LOC_Os02g12650
Os.11236.1.S1_at--1070--9151Chr02:6606256..6606280 (25 bp)
TGCGCCGTTGTCTTAGCGTGTAAGA
LOC_Os02g12650
Os.11236.1.S1_at--338--7451Chr02:6606273..6606297 (25 bp)
GTGTAAGATGCGTACTCTCCAGCAA
LOC_Os02g12650
Os.11236.1.S1_at--742--9171Chr02:6606341..6606365 (25 bp)
TGCCCCTGATACTTGCATCTATGGA
LOC_Os02g12650
Os.11236.1.S1_at--874--3691Chr02:6606359..6606383 (25 bp)
CTATGGACCAGTTTCTCCAGGTTAT
LOC_Os02g12650
Os.11236.1.S1_at--579--1071Chr02:6606428..6606452 (25 bp)
AGGGACATCCGGACATGAATTGCAT
LOC_Os02g12650
Os.11236.1.S1_at--472--4991Chr02:6606449..6606473 (25 bp)
GCATGCAAATGTTGCCCTGGCAGTT
LOC_Os02g12650
Target Sequence 
TGGGACTACATTTCAGACACCTTCTCTGGAACTCTTCTCACCTATTTCGTTTCCACCACCGTCTCACCGCTGCGCACCGA
TGAAATGGGCGACGACGCGGAGGAGTTCTTCAAGAGCAGGACGAAGGCCAACATCGCGAGGACGGTGAAGCAGAGCATCG
AGAGAGTGAGGATCAATGCCAAATGGGTGGAGAGCACCAGGGCCGAGGCTAACCTGGGCAATGTCCTNAAGGAAATTTCT
CACGACCACTGAGACGACCGATCTTTTCCTGCGCCGTTGTCTTAGCGTGTAAGATGCGTACTCTCCAGCAACAAGTTAGT
AATAAGAACTTGGTGGGTTAGACGACCTGTTGCATGCCCCTGATACTTGCATCTATGGACCAGTTTCTCCAGGTTATGTC
AGTTTGATAGATGCAATTGCAATTTGCATGGAGTATTTGATAGGGACATCCGGACATGAATTGCATGCAAATGTTGCCCT
GGCAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11236.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis