Browse Element(s) Details


OsAffx.24212.1.S1_at

Description tigr:9630.m01146
TID=OsAffx.24212.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=17.9 kda class ii heat shock protein. (common sunflower)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1261011/11Hsp20/alpha crystallin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12560NANA2+6566133..6566588expressed protein
LOC_Os02g12570Os.37484.1.S1_at10/112+6568159..6572501Pre-mRNA cleavage complex II protein Clp1 containing protein, expressed
LOC_Os02g12580Os.10337.2.S1_at11/112+6572766..6577608Serine/threonine protein phosphatase PP2A-3 catalytic subunit, putative, expressed
LOC_Os02g12580Os.10337.1.S1_x_at11/112+6572766..6577608Serine/threonine protein phosphatase PP2A-3 catalytic subunit, putative, expressed
LOC_Os02g12590OsAffx.12007.1.S1_at10/112+6578959..6579539hypothetical protein
LOC_Os02g12600OsAffx.12008.1.S1_x_at11/112+6582328..6587404NOL1/NOP2/sun family protein, expressed
LOC_Os02g12600Os.18147.1.S1_at10/112+6582328..6587404NOL1/NOP2/sun family protein, expressed
LOC_Os02g12610OsAffx.24212.1.S1_at11/112+6587538..6588065Hsp20/alpha crystallin family protein
LOC_Os02g12610OsAffx.24212.1.S1_x_at11/112+6587538..6588065Hsp20/alpha crystallin family protein
LOC_Os02g12620NANA2+6588391..6590160retrotransposon protein, putative, unclassified
LOC_Os02g12630OsAffx.10901.1.S1_at3/112+6591946..6594769retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g12640OsAffx.24213.1.S1_at11/112+6595265..6595657hypothetical protein
LOC_Os02g12650Os.11236.1.S1_at11/112+6599222..6606524Peptidase family M1 containing protein, expressed
LOC_Os02g12660Os.15687.2.A1_at11/112+6609459..6613879protein kinase family protein, putative, expressed
LOC_Os02g12660OsAffx.15330.1.S1_x_at1/112+6609459..6613879protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0006972biological_processhyperosmotic response
GO:0009408biological_processresponse to heat
GO:0005829cellular_componentcytosol
GO:0051082molecular_functionunfolded protein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24212.1.S1_at--392--4091Chr02:6587938..6587962 (25 bp)
CGACGCGCGCCTACGTGCGCGACCG
LOC_Os02g12610
OsAffx.24212.1.S1_at--463--8531Chr02:6587890..6587914 (25 bp)
TGGACGTCAAGGAGCTCCGGGCCTC
LOC_Os02g12610
OsAffx.24212.1.S1_at--435--1891Chr02:6587887..6587911 (25 bp)
ACGTCAAGGAGCTCCGGGCCTCCGG
LOC_Os02g12610
OsAffx.24212.1.S1_at--551--771Chr02:6587699..6587723 (25 bp)
ATGGGCAAGTTCATGAGGAGGTTCC
LOC_Os02g12610
OsAffx.24212.1.S1_at--436--8631Chr02:6587698..6587722 (25 bp)
TGGGCAAGTTCATGAGGAGGTTCCC
LOC_Os02g12610
OsAffx.24212.1.S1_at--1065--8191Chr02:6587696..6587720 (25 bp)
GGCAAGTTCATGAGGAGGTTCCCGC
LOC_Os02g12610
OsAffx.24212.1.S1_at--1157--5151Chr02:6587695..6587719 (25 bp)
GCAAGTTCATGAGGAGGTTCCCGCT
LOC_Os02g12610
OsAffx.24212.1.S1_at--271--3231Chr02:6587694..6587718 (25 bp)
CAAGTTCATGAGGAGGTTCCCGCTG
LOC_Os02g12610
OsAffx.24212.1.S1_at--1048--2811Chr02:6587693..6587717 (25 bp)
AAGTTCATGAGGAGGTTCCCGCTGC
LOC_Os02g12610
OsAffx.24212.1.S1_at--1071--1211Chr02:6587692..6587716 (25 bp)
AGTTCATGAGGAGGTTCCCGCTGCC
LOC_Os02g12610
OsAffx.24212.1.S1_at--297--2231Chr02:6587632..6587656 (25 bp)
ACAAGGACGGGGTGCTCACCGTCAC
LOC_Os02g12610
Target Sequence 
CGACGCGCGCCTACGTGCGCGACCGCCGCGCCATGGCCAACACCCCCATGGACGTCAAGGAGCTCCGGGCCTCCGGCGCG
CTCGTGCTCGCCGTCGACATGCCCGGCGTCGCCCCCGCCGACGTCCGGGTCGAGGTCGAGGACGGCAACGTGCTCGCCAT
CAGCGGCGAGCGCAGGCGCCCCGCCGGCGACGGCGACGACGGCGGCGAGGGGGTGAAGTACCTGAGGATGGAGCGGCGGA
TGGGCAAGTTCATGAGGAGGTTCCCGCTGCCGGAGAGCGCCGACCTCGACGGCGTCCGCGCCGAGTACAAGGACGGGGTG
CTCACCGTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24212.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis