Browse Element(s) Details


Os.11374.1.S1_s_at

Description gb:AU075410
DB_XREF= gi:5056031
DB_XREF=AU075410
CLONE=E2981_4Z
TID=Os.11374.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.11374 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4537011/11LEM3 family/CDC50 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45340OsAffx.27316.1.S1_at11/115+26217143..26223824DNA polymerase III, delta subunit family protein
LOC_Os05g45340OsAffx.7824.1.S1_s_at1/115+26217143..26223824DNA polymerase III, delta subunit family protein
LOC_Os05g45350Os.15152.2.S1_at11/115+26227598..26230909DnaJ domain containing protein, expressed
LOC_Os05g45350Os.15152.1.S1_a_at11/115+26227598..26230909DnaJ domain containing protein, expressed
LOC_Os05g45360NANA5+26234495..26235451hypothetical protein
LOC_Os05g45370Os.11374.1.S1_s_at11/115+26239195..26242888LEM3 family/CDC50 family protein, expressed
LOC_Os05g45370OsAffx.27318.1.S1_at11/115+26239195..26242888LEM3 family/CDC50 family protein, expressed
LOC_Os05g45380OsAffx.27319.2.S1_s_at11/115+26245355..26246307expressed protein
LOC_Os05g45390OsAffx.27319.1.S1_at11/115+26247703..26248228hypothetical protein
LOC_Os05g45400Os.11739.2.A1_a_at11/115+26250545..26254060expressed protein
LOC_Os05g45410Os.40018.1.S1_at11/115+26261154..26263625HSF-type DNA-binding domain containing protein, expressed
LOC_Os05g45420Os.3393.1.S1_at11/115+26263742..26268345SNF1-related protein kinase catalytic alpha subunit KIN10, putative, expressed
LOC_Os05g45420Os.3393.1.S2_at11/115+26263742..26268345SNF1-related protein kinase catalytic alpha subunit KIN10, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11374.1.S1_s_at--622--10851Chr05:26239644..26239668 (25 bp)
TTGGCCTTCGTTGGTCTCAACATGG
LOC_Os05g45370
Os.11374.1.S1_s_at--801--3211Chr05:26239526..26239651 (25 bp)
CAACATGGTTAAGCCAAGGACACTT
LOC_Os05g45370
Os.11374.1.S1_s_at--1050--4191Chr05:26239496..26239520 (25 bp)
CCCGTCTTACTTGTCTTGGAACAAG
LOC_Os05g45370
Os.11374.1.S1_s_at--525--4171Chr05:26239466..26239490 (25 bp)
CCCAGATTATGTCCAATGATCATGC
LOC_Os05g45370
Os.11374.1.S1_s_at--1005--10111Chr05:26239459..26239483 (25 bp)
TATGTCCAATGATCATGCGAGCGGG
LOC_Os05g45370
Os.11374.1.S1_s_at--291--3511Chr05:26239428..26239452 (25 bp)
CATGTGTTCATGTCCCATTGGGTTC
LOC_Os05g45370
Os.11374.1.S1_s_at--145--771Chr05:26239419..26239443 (25 bp)
ATGTCCCATTGGGTTCGTCTGCAGC
LOC_Os05g45370
Os.11374.1.S1_s_at--617--31Chr05:26239412..26239436 (25 bp)
ATTGGGTTCGTCTGCAGCGTTGGAT
LOC_Os05g45370
Os.11374.1.S1_s_at--236--7871Chr05:26239408..26239432 (25 bp)
GGTTCGTCTGCAGCGTTGGATTAAA
LOC_Os05g45370
Os.11374.1.S1_s_at--439--7171Chr05:26239403..26239427 (25 bp)
GTCTGCAGCGTTGGATTAAAATTGT
LOC_Os05g45370
Os.11374.1.S1_s_at--385--2451Chr05:26239386..26239410 (25 bp)
AAAATTGTGTGGTTTGTAGAGAGCA
LOC_Os05g45370
Target Sequence 
TTGGCCTTCGTTGGTCTCAACATGGTTAAGCCAAGGACACTTGGAGNCCCGTCTTACTTGTCTTGGAACAAGGAGANCCC
AGATTATGTCCAATGATCATGCGAGCGGGGATGTTCATGTGTTCATGTCCCATTGGGTTCGTCTGCAGCGTTGGATTAAA
ATTGTGTGGTTTGTAGAGAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11374.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis