Browse Element(s) Details


Os.11390.1.S1_at

Description gb:AK068569.1
DB_XREF= gi:32978586
TID=Os.11390.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11390 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013154E21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013154E21, full insert sequence.
FL= gb:AK068569.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7128010/11Glycerol-3-phosphate dehydrogenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71240Os.34808.1.S1_at11/111+41546886..41554183Calcium-transporting ATPase 11, plasma membrane-type, putative, expressed
LOC_Os01g71250Os.28979.2.S1_x_at11/111+41554233..41556655expressed protein
LOC_Os01g71250Os.28979.1.S1_at11/111+41554233..41556655expressed protein
LOC_Os01g71256Os.33291.1.S1_a_at10/111+41557703..41562435expressed protein
LOC_Os01g71262Os.55362.1.S1_at11/111+41563261..41565644expressed protein
LOC_Os01g71270Os.48006.1.S1_at11/111+41569316..41570686Eukaryotic peptide chain release factor subunit 1-2, putative, expressed
LOC_Os01g71270Os.12402.2.S1_x_at1/111+41569316..41570686Eukaryotic peptide chain release factor subunit 1-2, putative, expressed
LOC_Os01g71280Os.11390.1.S1_at10/111+41572437..41576747Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g71300Os.57405.1.S1_at11/111+41578082..41599153Esterase D, putative, expressed
LOC_Os01g71300Os.57001.1.S1_at11/111+41578082..41599153Esterase D, putative, expressed
LOC_Os01g71300Os.50480.1.S1_at11/111+41578082..41599153Esterase D, putative, expressed
LOC_Os01g71300Os.18519.1.S1_at10/111+41578082..41599153Esterase D, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006072biological_processglycerol-3-phosphate metabolism
GO:0009331cellular_componentglycerol-3-phosphate dehydrogenase complex
GO:0004367molecular_functionglycerol-3-phosphate dehydrogenase (NAD+) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11390.1.S1_at--273--6911Chr01:41575787..41575811 (25 bp)
GTATCTCTGCTGTTGGTGCATTTTT
LOC_Os01g71280
Os.11390.1.S1_at--192--9531Chr01:41575818..41575842 (25 bp)
TCTCAGTCAACCCAGCTTAAGTGTG
LOC_Os01g71280
Os.11390.1.S1_at--722--2731Chr01:41575861..41575885 (25 bp)
AAGCAAGTTGCACCTGCTGAACTGT
LOC_Os01g71280
Os.11390.1.S1_at--559--6051Chr01:41576408..41576432 (25 bp)
GAGATATTCTGCAAGCCCTGAGAGA
LOC_Os01g71280
Os.11390.1.S1_at--702--5551Chr01:41576434..41576458 (25 bp)
GAAACCATGAATGATCCTCGTGAAA
LOC_Os01g71280
Os.11390.1.S1_at--779--8471Chr01:41576468..41576492 (25 bp)
TGGCGCAAAGCCATGCATTCTACCG
LOC_Os01g71280
Os.11390.1.S1_at--641--5831Chr01:41576516..41576540 (25 bp)
GACCTGTTCGTCCTGTATATGATTA
LOC_Os01g71280
Os.11390.1.S1_at--1078--5991Chr01:41576561..41576585 (25 bp)
GAGACCTCTAGTTTGACATGCTTAG
LOC_Os01g71280
Os.11390.1.S1_at--1101--31Chr01:41576616..41576640 (25 bp)
ATTGTCGCTGGCCTATGTGTGAACT
LOC_Os01g71280
Os.11390.1.S1_at--559--6551Chr01:41576685..41576709 (25 bp)
GATTATCATGCCGTACAACAGTACA
LOC_Os01g71280
Os.11390.1.S1_at--304--9831Chr01:41576731..41576755 (25 bp)
TAAAGAATTTCCTACACACGCCATG
NONE
Target Sequence 
GTATCTCTGCTGTTGGTGCATTTTTTGANCTTCTCAGTCAACCCAGCTTAAGTGTGCAACACCCAGAGGAAAATAAGCAA
GTTGCACCTGCTGAACTGTGCCCGATCTTGAAGAGGCTNTATAGAATACTAATAAAAAGGGAGCTCTCGACAAGAGATAT
TCTGCAAGCCCTGAGAGATGAAACCATGAATGATCCTCGTGAAAGGATTGAGATGGCGCAAAGCCATGCATTCTACCGCC
CATCTCTCCTAGGAAAACCATGACCTGTTCGTCCTGTATATGATTAGAACATAAACAAGGTTGGATGAGACCTCTAGTTT
GACATGCTTAGCATCATTCGTTATTAAGCCTGAAGAAGGTGATTGTCGCTGGCCTATGTGTGAACTGTGAATCCCAATGG
GGCTTATTTTTCTGGAATTGTTAGTACTTTGATTATCATGCCGTACAACAGTACAAGAGAGAGTGCACAGAGTCAATAAA
GAATTTCCTACACACGCCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11390.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis