Browse Element(s) Details


Os.28979.2.S1_x_at

Description gb:NM_190090.1
DB_XREF= gi:34907263
GEN=P0504E02.28
TID=Os.28979.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.28979 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0504E02.28 (P0504E02.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0504E02.28 (P0504E02.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7125011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71220Os.53646.1.S1_at10/111+41530698..41535561hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os01g71230Os.12071.1.S1_at11/111+41541160..41543918Nascent polypeptide-associated complex alpha subunit-like protein 3, putative, expressed
LOC_Os01g71240Os.34808.1.S1_at11/111+41546886..41554183Calcium-transporting ATPase 11, plasma membrane-type, putative, expressed
LOC_Os01g71250Os.28979.2.S1_x_at11/111+41554233..41556655expressed protein
LOC_Os01g71250Os.28979.1.S1_at11/111+41554233..41556655expressed protein
LOC_Os01g71256Os.33291.1.S1_a_at10/111+41557703..41562435expressed protein
LOC_Os01g71262Os.55362.1.S1_at11/111+41563261..41565644expressed protein
LOC_Os01g71270Os.48006.1.S1_at11/111+41569316..41570686Eukaryotic peptide chain release factor subunit 1-2, putative, expressed
LOC_Os01g71270Os.12402.2.S1_x_at1/111+41569316..41570686Eukaryotic peptide chain release factor subunit 1-2, putative, expressed
LOC_Os01g71280Os.11390.1.S1_at10/111+41572437..41576747Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g71300Os.57405.1.S1_at11/111+41578082..41599153Esterase D, putative, expressed
LOC_Os01g71300Os.57001.1.S1_at11/111+41578082..41599153Esterase D, putative, expressed
LOC_Os01g71300Os.50480.1.S1_at11/111+41578082..41599153Esterase D, putative, expressed
LOC_Os01g71300Os.18519.1.S1_at10/111+41578082..41599153Esterase D, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28979.2.S1_x_at--921--7931Chr01:41555571..41555595 (25 bp)
GGATTTCTGACCTTACCTCAGGAAG
LOC_Os01g71250
Os.28979.2.S1_x_at--887--171Chr01:41555546..41555570 (25 bp)
ATTTAGTCCGGTGGCGAGCATTGGT
LOC_Os01g71250
Os.28979.2.S1_x_at--734--571Chr01:41555517..41555541 (25 bp)
ATGCCTTGTTCATTGGTCCACGGAC
LOC_Os01g71250
Os.28979.2.S1_x_at--1161--5691Chr01:41555495..41555519 (25 bp)
GACTATCTGTGTCTCCTCTAAGGCA
LOC_Os01g71250
Os.28979.2.S1_x_at--443--9771Chr01:41555477..41555501 (25 bp)
TAAGGCACTTCCTACCATTTTCTGT
LOC_Os01g71250
Os.28979.2.S1_x_at--1056--7871Chr01:41555440..41555464 (25 bp)
GGTTATATATTTCACACTCCTCCAA
LOC_Os01g71250
Os.28979.2.S1_x_at--1153--10171Chr01:41555410..41555434 (25 bp)
TTGTTCTTTACGCAATACCACCTCA
LOC_Os01g71250
Os.28979.2.S1_x_at--995--9951Chr01:41555378..41555402 (25 bp)
TACCTGGTCACCTCTGATTGATGGA
LOC_Os01g71250
Os.28979.2.S1_x_at--620--6891Chr01:41555324..41555348 (25 bp)
GTATAGCCTCATTCACCATATCTTA
LOC_Os01g71250
Os.28979.2.S1_x_at--1025--9931Chr01:41554607..41554631 (25 bp)
TACGATCCTATTTTGTCGCTGTCAA
LOC_Os01g71250
Os.28979.2.S1_x_at--1046--8971Chr01:41554555..41554579 (25 bp)
TGAACTTTCTGAATCCATTTCGGGA
LOC_Os01g71250
Target Sequence 
GGATTTCTGACCTTACCTCAGGAAGATTTAGTCCGGTGGCGAGCATTGGTGACCATGCCTTGTTCATTGGTCCACGGACT
ATCTGTGTCTCCTCTAAGGCACTTCCTACCATTTTCTGTGGTGATACTGGTGGTTATATATTTCACACTCCTCCAACGGA
ATTGTTCTTTACGCAATACCACCTCAGCAGTCGTACCTGGTCACCTCTGATTGATGGAAGCATTGGAAATTCACCTCCAC
CTAGGCCGTATAGCCTCATTCACCATATCTTAACATGTTGCTATCGTAAATATTGGGCTAAAAGACTTGCAATACGGAGT
TTGGAACACAAATCCTTTGTGGCGTGTAAAGCGAAATTGCCGAGATGGAGCCTGAAGGACTATTGTGGAGTTAAAGTATA
CGATCCTATTTTGTCGCTGTCAAAAACTCCAAAACCCTCAACTATATATCTGAACTTTCTGAATCCATTTCGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28979.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis