Browse Element(s) Details


Os.33291.1.S1_a_at

Description gb:AK101079.1
DB_XREF= gi:32986288
TID=Os.33291.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.33291 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0504E02.29 (P0504E02.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033024C23, full insert sequence.
FL= gb:AK101079.1 gb:AK064555.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7125610/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71220Os.53646.1.S1_at10/111+41530698..41535561hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os01g71230Os.12071.1.S1_at11/111+41541160..41543918Nascent polypeptide-associated complex alpha subunit-like protein 3, putative, expressed
LOC_Os01g71240Os.34808.1.S1_at11/111+41546886..41554183Calcium-transporting ATPase 11, plasma membrane-type, putative, expressed
LOC_Os01g71250Os.28979.2.S1_x_at11/111+41554233..41556655expressed protein
LOC_Os01g71250Os.28979.1.S1_at11/111+41554233..41556655expressed protein
LOC_Os01g71256Os.33291.1.S1_a_at10/111+41557703..41562435expressed protein
LOC_Os01g71262Os.55362.1.S1_at11/111+41563261..41565644expressed protein
LOC_Os01g71270Os.48006.1.S1_at11/111+41569316..41570686Eukaryotic peptide chain release factor subunit 1-2, putative, expressed
LOC_Os01g71270Os.12402.2.S1_x_at1/111+41569316..41570686Eukaryotic peptide chain release factor subunit 1-2, putative, expressed
LOC_Os01g71280Os.11390.1.S1_at10/111+41572437..41576747Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g71300Os.57405.1.S1_at11/111+41578082..41599153Esterase D, putative, expressed
LOC_Os01g71300Os.57001.1.S1_at11/111+41578082..41599153Esterase D, putative, expressed
LOC_Os01g71300Os.50480.1.S1_at11/111+41578082..41599153Esterase D, putative, expressed
LOC_Os01g71300Os.18519.1.S1_at10/111+41578082..41599153Esterase D, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003713molecular_functiontranscription coactivator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33291.1.S1_a_at--358--6111Chr01:41558970..41558994 (25 bp)
GAGTGCTAATCACACCAAATGCTAA
LOC_Os01g71256
Os.33291.1.S1_a_at--1106--4831Chr01:41558950..41558974 (25 bp)
GCTAAACCTAGCAAGGAGCTTTTGA
LOC_Os01g71256
Os.33291.1.S1_a_at--369--1211Chr01:41558923..41558947 (25 bp)
AGTTTAGTAGTGACTGCTCATGGCA
LOC_Os01g71256
Os.33291.1.S1_a_at--470--10071Chr01:41558919..41558940 (22 bp)
TAGTGACTGCTCATGGCAAGGTGTT
LOC_Os01g71256
Os.33291.1.S1_a_at--155--7751Chr01:41558315..41558339 (25 bp)
GGTGTTGGAGAGAAACGCAATGTCC
LOC_Os01g71256
Os.33291.1.S1_a_at--1002--2751Chr01:41558241..41558265 (25 bp)
AAGACTACAAAATATGCGTGCCATT
LOC_Os01g71256
Os.33291.1.S1_a_at--784--4631NONE
GCGTGCCATTCATTAAGAACGGTTT
NONE
Os.33291.1.S1_a_at--7--5471Chr01:41558124..41558144 (21 bp)
GAACGGTTTTGAGGTGTTTGAATCA
LOC_Os01g71256
Os.33291.1.S1_a_at--414--7431Chr01:41558111..41558135 (25 bp)
GTGTTTGAATCAGAGCTTGTGCTTA
LOC_Os01g71256
Os.33291.1.S1_a_at--158--7331Chr01:41558093..41558117 (25 bp)
GTGCTTAATGGTATTGTCACCCAGA
LOC_Os01g71256
Os.33291.1.S1_a_at--151--7871Chr01:41558084..41558108 (25 bp)
GGTATTGTCACCCAGAAGCTAGAAT
LOC_Os01g71256
Target Sequence 
GAGTGCTAATCACACCAAATGCTAAACCTAGCAAGGAGCTTTTGAAAAGTTTAGTAGTGACTGCTCATGGCAAGGTGTTG
GAGAGAAACGCAATGTCCAAGATGAAGAATAGAAGTTTAATGGGANCTTTTGTAATCTCTTGTGAACAAGACTACAAAAT
ATGCGTGCCATTCATTAAGAACGGTTTTGAGGTGTTTGAATCAGAGCTTGTGCTTAATGGTATTGTCACCCAGAAGCTAG
AAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33291.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis