Browse Element(s) Details


Os.11398.1.S1_at

Description gb:AK072923.1
DB_XREF= gi:32982946
TID=Os.11398.1
CNT=51
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.11398 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative proline-rich protein (OSJNBa0031A07.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023146D17, full insert sequence.
FL= gb:AK061576.1 gb:AK058887.1 gb:AB071178.1 gb:AK072923.1 gb:AK104542.1 gb:AK104257.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0598011/11proline-rich protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05930Os.46085.1.S1_x_at11/1110+2975065..2976037proline-rich protein, putative, expressed
LOC_Os10g05930Os.21524.2.S1_x_at3/1110+2975065..2976037proline-rich protein, putative, expressed
LOC_Os10g05940OsAffx.20746.1.S1_at11/1110+2979518..2980873expressed protein
LOC_Os10g05950Os.8638.1.S1_s_at11/1110+2983492..2985384proline-rich protein, putative, expressed
LOC_Os10g05950Os.8638.1.S1_at11/1110+2983492..2985384proline-rich protein, putative, expressed
LOC_Os10g05960OsAffx.18150.1.S1_at11/1110+2987757..2988335hypothetical protein
LOC_Os10g05970Os.37820.1.S1_x_at11/1110+2996967..2998098proline-rich protein, putative, expressed
LOC_Os10g05970Os.8385.1.S1_s_at11/1110+2996967..2998098proline-rich protein, putative, expressed
LOC_Os10g05970Os.8638.1.S1_s_at1/1110+2996967..2998098proline-rich protein, putative, expressed
LOC_Os10g05980Os.11398.1.S1_at11/1110+3001037..3002195proline-rich protein, putative, expressed
LOC_Os10g05990Os.10678.1.S1_at11/1110+3004849..3006285proline-rich protein, putative, expressed
LOC_Os10g05990Os.37820.1.S1_x_at1/1110+3004849..3006285proline-rich protein, putative, expressed
LOC_Os10g05990Os.8638.1.S1_s_at1/1110+3004849..3006285proline-rich protein, putative, expressed
LOC_Os10g06000Os.8385.2.S1_at11/1110+3015765..3016868proline-rich protein, putative, expressed
LOC_Os10g06000Os.8385.2.S1_x_at11/1110+3015765..3016868proline-rich protein, putative, expressed
LOC_Os10g06000Os.37820.1.S1_x_at1/1110+3015765..3016868proline-rich protein, putative, expressed
LOC_Os10g06000Os.8018.1.S1_x_at1/1110+3015765..3016868proline-rich protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005618cellular_componentcell wall
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11398.1.S1_at--535--2771Chr10:3001611..3001635 (25 bp)
AAGACCAGCTATCCGTCGGCTTTGT
LOC_Os10g05980
Os.11398.1.S1_at--275--9451Chr10:3001626..3001650 (25 bp)
TCGGCTTTGTGTGCGTCGGCGACCA
LOC_Os10g05980
Os.11398.1.S1_at--1107--2651Chr10:3001833..3001857 (25 bp)
AAGCCTGAGCCAAAGTCGGAACCCA
LOC_Os10g05980
Os.11398.1.S1_at--338--4031Chr10:3001933..3001957 (25 bp)
CGTTTGGTCTTGTATGATTTCGTGC
LOC_Os10g05980
Os.11398.1.S1_at--999--191Chr10:3001949..3001973 (25 bp)
ATTTCGTGCCATATCAGTGTGTCCG
LOC_Os10g05980
Os.11398.1.S1_at--698--7471Chr10:3001965..3001989 (25 bp)
GTGTGTCCGCAGAATAACGCTTTCT
LOC_Os10g05980
Os.11398.1.S1_at--590--2991Chr10:3002020..3002044 (25 bp)
AATGTACTTGCTAGCTTTCATCCGC
LOC_Os10g05980
Os.11398.1.S1_at--382--7471Chr10:3002063..3002087 (25 bp)
GTGTGACCGGGTTCATTTATTGGAT
LOC_Os10g05980
Os.11398.1.S1_at--408--6511Chr10:3002085..3002109 (25 bp)
GATATCGCATGCATATTAGCAGGGC
LOC_Os10g05980
Os.11398.1.S1_at--425--791Chr10:3002113..3002137 (25 bp)
ATGTGTACTGTAATATCTGCCTGTT
LOC_Os10g05980
Os.11398.1.S1_at--654--471Chr10:3002127..3002151 (25 bp)
ATCTGCCTGTTGTTTTTATTTCTCT
LOC_Os10g05980
Target Sequence 
AAGACCAGCTATCCGTCGGCTTTGTGTGCGTCGGCGACCATCTGCGGCCCCATCAAGAAGAAGATCATCGACCACTTCCA
TAAGAAGCCGGTGCCACCGAAGCCGGATCCCAAGCCAGAGCCGCCCAAGCCGAAGCCAGAGCCAGAGCACCCCATCCTCG
ACCACTTCCACAAGAAGGAGAAGGACTTCTTTGACCACTTCCACAAGAAGCCCGTACCACCCAAGCCTGAGCCAAAGTCG
GAACCCAAGCCACAGCCCAAGCCACAGCCAGCGCCTGAGTACCACAACCCTAGCCCACCAGCGAAGCACTAAACATTATC
TACGTTTGGTCTTGTATGATTTCGTGCCATATCAGTGTGTCCGCAGAATAACGCTTTCTACCCCCGTGTGAGATTATACA
TTGAAATATAATGTACTTGCTAGCTTTCATCCGCAGGAGTTTTTTTTTTTNAAAGTGTGACCGGGTTCATTTATTGGATA
TCGCATGCATATTAGCAGGGCACGATGTGTACTGTAATATCTGCCTGTTGTTTTTATTTCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11398.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis