Browse Element(s) Details


Os.11411.2.S1_a_at

Description gb:AK061087.1
DB_XREF= gi:32971105
TID=Os.11411.2
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11411 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013132J01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-206-G06, full insert sequence.
FL= gb:AK061087.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4019011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40140Os.23932.1.A1_at11/114+23666492..23670448expressed protein
LOC_Os04g40140Os.11595.2.S1_at1/114+23666492..23670448expressed protein
LOC_Os04g40150Os.12301.1.S1_at11/114+23673726..23677378glycosyl transferase family 17 protein, putative, expressed
LOC_Os04g40160OsAffx.26402.1.S1_at11/114+23678469..23682309hypothetical protein
LOC_Os04g40170OsAffx.14214.1.S1_at11/114+23692317..23692953hypothetical protein
LOC_Os04g40180Os.50983.1.S1_at11/114+23693789..23696092expressed protein
LOC_Os04g40190Os.11411.2.S1_a_at11/114+23695137..23697917expressed protein
LOC_Os04g40190Os.27023.1.A1_at10/114+23695137..23697917expressed protein
LOC_Os04g40190Os.46604.1.S1_s_at2/114+23695137..23697917expressed protein
LOC_Os04g40200OsAffx.26403.1.S1_at11/114+23699937..23701782HNH endonuclease domain-containing protein, putative
LOC_Os04g40200OsAffx.32172.1.S1_s_at1/114+23699937..23701782HNH endonuclease domain-containing protein, putative
LOC_Os04g40210NANA4+23704411..23705266transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g40220Os.27102.1.S1_x_at1/114+23708417..23711214transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g40230NANA4+23713603..23714869transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g40240NANA4+23715163..23717382transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g40250Os.53658.1.S1_at8/114+23720171..23722903hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11411.2.S1_a_at--651--1991Chr04:23697237..23697261 (25 bp)
ACTCGGATGATCTCCTTTTCTTCAA
LOC_Os04g40190
Os.11411.2.S1_a_at--310--9991Chr04:23697197..23697221 (25 bp)
TACCAAGACAGCATGTTCTTCGCCA
LOC_Os04g40190
Os.11411.2.S1_a_at--291--7932Chr11:19171014..19171038 (25 bp)
GGATTAAGTCTTTGGTTGGCTGGAT
NONE
Os.11411.2.S1_a_at--215--7631Chr04:23697136..23697160 (25 bp)
GGGAAATTCTTCCTCTTTATCTCTT
LOC_Os04g40190
Os.11411.2.S1_a_at--1037--9251Chr04:23697126..23697150 (25 bp)
TCCTCTTTATCTCTTGGCAGCAATA
LOC_Os04g40190
Os.11411.2.S1_a_at--864--8251Chr04:23697111..23697135 (25 bp)
GGCAGCAATAACCATGCAGGATTTA
LOC_Os04g40190
Os.11411.2.S1_a_at--864--4331Chr04:23697100..23697124 (25 bp)
CCATGCAGGATTTATCGTTCGGGTT
LOC_Os04g40190
Os.11411.2.S1_a_at--191--6851Chr04:23697049..23697073 (25 bp)
GTTTGCAGGTTTGCAGTCCAAGCTT
LOC_Os04g40190
Os.11411.2.S1_a_at--334--9211Chr04:23696839..23696863 (25 bp)
TGCCACAGTACCCTATCGATTTGCT
LOC_Os04g40190
Os.11411.2.S1_a_at--1041--4292Chr03:18580737..18581033 (25 bp)
CCTATCGATTTGCTCCTTCATTGCT
NONE
Os.11411.2.S1_a_at--440--9634Chr10:8840345..8840368 (24 bp)
TCAGTTGACCTCTCTCTTGTTAAAT
NONE
Target Sequence 
ACTCGGATGATCTCCTTTTCTTCAACCTTCTCCATCGAGTTACCAAGACAGCATGTTCTTCGCCACCATCTTTGGATTAA
GTCTTTGGTTGGCTGGATTTGGGGAAATTCTTCCTCTTTATCTCTTGGCAGCAATAACCATGCAGGATTTATCGTTCGGG
TTGAGCCCAGATTGGATTTGCAACTTTGGTTTGCAGGTTTGCAGTCCAAGCTTGTCAGATTCAATGATGAACCCCGTGGA
AATCTTTTGTGGAGTCCGGTGATGTTCACACCAAAATCTACGGCTTCGCACCAAACCTCTCATATGTGTCGTTTCCGTGG
AGGCAGCCGAAGGGGTTTACCAGTTCGTCAAGCGGAGTACATATCAATAGAGGCCCTTGGATGCAATTGTCGCGGCCCTG
CCACAGTACCCTATCGATTTGCTCCTTCATTGCTGCTTAGTTTCATTATAAAGTTTGCTTCTTTTTTTCAGTTGACCTCT
CTCTTGTTAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11411.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis