Browse Element(s) Details


OsAffx.14214.1.S1_at

Description tigr:9632.m03814
TID=OsAffx.14214.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4017011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40140Os.23932.1.A1_at11/114+23666492..23670448expressed protein
LOC_Os04g40140Os.11595.2.S1_at1/114+23666492..23670448expressed protein
LOC_Os04g40150Os.12301.1.S1_at11/114+23673726..23677378glycosyl transferase family 17 protein, putative, expressed
LOC_Os04g40160OsAffx.26402.1.S1_at11/114+23678469..23682309hypothetical protein
LOC_Os04g40170OsAffx.14214.1.S1_at11/114+23692317..23692953hypothetical protein
LOC_Os04g40180Os.50983.1.S1_at11/114+23693789..23696092expressed protein
LOC_Os04g40190Os.11411.2.S1_a_at11/114+23695137..23697917expressed protein
LOC_Os04g40190Os.27023.1.A1_at10/114+23695137..23697917expressed protein
LOC_Os04g40190Os.46604.1.S1_s_at2/114+23695137..23697917expressed protein
LOC_Os04g40200OsAffx.26403.1.S1_at11/114+23699937..23701782HNH endonuclease domain-containing protein, putative
LOC_Os04g40200OsAffx.32172.1.S1_s_at1/114+23699937..23701782HNH endonuclease domain-containing protein, putative
LOC_Os04g40210NANA4+23704411..23705266transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g40220Os.27102.1.S1_x_at1/114+23708417..23711214transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g40230NANA4+23713603..23714869transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g40240NANA4+23715163..23717382transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14214.1.S1_at--24--8371Chr04:23692899..23692923 (25 bp)
GGCGGTCTGGTAACTCTCCAAGGGA
LOC_Os04g40170
OsAffx.14214.1.S1_at--1079--7771Chr04:23692896..23692920 (25 bp)
GGTCTGGTAACTCTCCAAGGGACAT
LOC_Os04g40170
OsAffx.14214.1.S1_at--331--7831Chr04:23692891..23692915 (25 bp)
GGTAACTCTCCAAGGGACATCGTAT
LOC_Os04g40170
OsAffx.14214.1.S1_at--134--2891Chr04:23692880..23692904 (25 bp)
AAGGGACATCGTATGGGACTGCGCC
LOC_Os04g40170
OsAffx.14214.1.S1_at--819--491Chr04:23692873..23692897 (25 bp)
ATCGTATGGGACTGCGCCCATTAAG
LOC_Os04g40170
OsAffx.14214.1.S1_at--705--8111Chr04:23692865..23692889 (25 bp)
GGACTGCGCCCATTAAGCCAGCATT
LOC_Os04g40170
OsAffx.14214.1.S1_at--1147--1971Chr04:23692811..23692835 (25 bp)
ACTGCTCGAGGCTGAGGCGTGATAA
LOC_Os04g40170
OsAffx.14214.1.S1_at--639--4551Chr04:23692795..23692819 (25 bp)
GCGTGATAACGATGTACCTTGGCCT
LOC_Os04g40170
OsAffx.14214.1.S1_at--214--6471Chr04:23692791..23692815 (25 bp)
GATAACGATGTACCTTGGCCTTCAC
LOC_Os04g40170
OsAffx.14214.1.S1_at--494--751Chr04:23692784..23692808 (25 bp)
ATGTACCTTGGCCTTCACCTAGGGT
LOC_Os04g40170
OsAffx.14214.1.S1_at--91--10871Chr04:23692777..23692801 (25 bp)
TTGGCCTTCACCTAGGGTGTTGAGC
LOC_Os04g40170
Target Sequence 
GGCGGTCTGGTAACTCTCCAAGGGACATCGTATGGGACTGCGCCCATTAAGCCAGCATTCCCGGGGGACCCCATGTTTCC
CGGGGTGCACTGCTCGAGGCTGAGGCGTGATAACGATGTACCTTGGCCTTCACCTAGGGTGTTGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14214.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis