Browse Element(s) Details


Os.46604.1.S1_s_at

Description gb:NM_193249.1
DB_XREF= gi:34913581
GEN=P0014E04.4
TID=Os.46604.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46604 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0014E04.4 (P0014E04.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0014E04.4 (P0014E04.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3533011/11expressed protein
LOC_Os04g401902/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g35270NANA1+19853690..19855895transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35280NANA1+19857412..19860744transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35290OsAffx.30226.2.S1_x_at1/111+19862297..19866004retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g35290OsAffx.442.1.S1_x_at1/111+19862297..19866004retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g35290Os.46785.2.S1_x_at1/111+19862297..19866004retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g35300OsAffx.11334.1.S1_at11/111+19866217..19867136Rp3 protein, putative
LOC_Os01g35310OsAffx.11335.1.S1_at11/111+19869284..19871103hypothetical protein
LOC_Os01g35310OsAffx.1158.1.S1_at1/111+19869284..19871103hypothetical protein
LOC_Os01g35320NANA1+19874147..19874975hypothetical protein
LOC_Os01g35330Os.46604.1.S1_s_at11/111+19876035..19876948expressed protein
LOC_Os01g35330Os.46431.1.S1_at10/111+19876035..19876948expressed protein
LOC_Os01g35340OsAffx.21272.1.S1_x_at11/111+19878442..19878675hypothetical protein
LOC_Os01g35360NANA1+19887181..19888530retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35370Os.40360.1.S1_x_at1/111+19894933..19895958hypothetical protein
LOC_Os01g35380OsAffx.1412.2.S1_at11/111+19897053..19899511retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35390NANA1+19899835..19903567retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46604.1.S1_s_at--399--1871Chr01:19876598..19876622 (25 bp)
ACGACCGCTGTGGTGCGGATGCGAC
LOC_Os01g35330
Os.46604.1.S1_s_at--639--4231Chr01:19876320..19876344 (25 bp)
CCGTGGAAATCTTTTGCGGAGTCCG
LOC_Os01g35330
Os.46604.1.S1_s_at--1040--8231Chr01:19876317..19876341 (25 bp)
TGGAAATCTTTTGCGGAGTCCGGTG
LOC_Os01g35330
Os.46604.1.S1_s_at--881--10693Chr11:19170750..19170865 (25 bp)
TTGCGGAGTCCGGTGATGCTTACAC
NONE
Os.46604.1.S1_s_at--906--3952Chr01:19876304..19876328 (25 bp)
CGGAGTCCGGTGATGCTTACACCAA
LOC_Os01g35330
Os.46604.1.S1_s_at--869--10631Chr01:19876269..19876293 (25 bp)
TTCGCAGCAAACCTCTCATATGTGT
LOC_Os01g35330
Os.46604.1.S1_s_at--510--5051Chr01:19876266..19876290 (25 bp)
GCAGCAAACCTCTCATATGTGTCGT
LOC_Os01g35330
Os.46604.1.S1_s_at--378--5132Chr04:23696947..23696970 (24 bp)
GCAAACCTCTCATATGTGTCGTTTC
LOC_Os04g40190
Os.46604.1.S1_s_at--7--4752Chr06:11508857..11508883 (25 bp)
GCTGACCTCTCTTGTTAAAGATGGT
NONE
Os.46604.1.S1_s_at--247--3752Chr10:8840358..8840382 (25 bp)
CTCTTGTTAAAGATGGTCCAACTCT
NONE
Os.46604.1.S1_s_at--818--6253Chr06:11508838..11509348 (25 bp)
GATGGTCCAACTCTTATGTTTATCC
NONE
Target Sequence 
ACGACCGCTGTGGTGCGGATGCGACCTGCAGTGCTGGCGTGGATGCTTACAGTATGAGCTCCTCAGATTCAACGATGAAC
TCCGTGGAAATCTTTTGCGGAGTCCGGTGATGCTTACACCAAAATCTACGGCTTCGCAGCAAACCTCTCATATGTGTCGT
TTCCGTGGAGGCAACCGTAGGGGCTTTCCGCTGACCTCTCTTGTTAAAGATGGTCCAACTCTTATGTTTATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46604.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis