Browse Element(s) Details


Os.46431.1.S1_at

Description gb:AU078289
DB_XREF= gi:5900634
DB_XREF=AU078289
CLONE=C51225_8Z
TID=Os.46431.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.46431 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3533010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g35270NANA1+19853690..19855895transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35280NANA1+19857412..19860744transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35290OsAffx.30226.2.S1_x_at1/111+19862297..19866004retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g35290OsAffx.442.1.S1_x_at1/111+19862297..19866004retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g35290Os.46785.2.S1_x_at1/111+19862297..19866004retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g35300OsAffx.11334.1.S1_at11/111+19866217..19867136Rp3 protein, putative
LOC_Os01g35310OsAffx.11335.1.S1_at11/111+19869284..19871103hypothetical protein
LOC_Os01g35310OsAffx.1158.1.S1_at1/111+19869284..19871103hypothetical protein
LOC_Os01g35320NANA1+19874147..19874975hypothetical protein
LOC_Os01g35330Os.46604.1.S1_s_at11/111+19876035..19876948expressed protein
LOC_Os01g35330Os.46431.1.S1_at10/111+19876035..19876948expressed protein
LOC_Os01g35340OsAffx.21272.1.S1_x_at11/111+19878442..19878675hypothetical protein
LOC_Os01g35360NANA1+19887181..19888530retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35370Os.40360.1.S1_x_at1/111+19894933..19895958hypothetical protein
LOC_Os01g35380OsAffx.1412.2.S1_at11/111+19897053..19899511retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35390NANA1+19899835..19903567retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46431.1.S1_at--655--4271NONE
CCTGGATGCCGGTATGGATGGTCTC
NONE
Os.46431.1.S1_at--664--7971Chr01:19876559..19876606 (25 bp)
GGATGCCGGTATGGATGGTCTCCTC
LOC_Os01g35330
Os.46431.1.S1_at--729--10151Chr01:19876405..19876429 (25 bp)
TATCGTTTCGGGTTGAGCACAGATT
LOC_Os01g35330
Os.46431.1.S1_at--870--1612Chr07:8522353..8522383 (25 bp)
AGCGGAGTGCACATCAATATAGGCC
NONE
Os.46431.1.S1_at--192--7351Chr01:19876197..19876221 (25 bp)
GTGCACATCAATATAGGCCCTCGGA
LOC_Os01g35330
Os.46431.1.S1_at--943--3091Chr01:19876189..19876213 (25 bp)
CAATATAGGCCCTCGGATGCAGTCG
LOC_Os01g35330
Os.46431.1.S1_at--978--4691Chr01:19876162..19876186 (25 bp)
GCGGCATTGCCGTAGTACCCTGTGG
LOC_Os01g35330
Os.46431.1.S1_at--828--71Chr01:19876157..19876181 (25 bp)
ATTGCCGTAGTACCCTGTGGATTTG
LOC_Os01g35330
Os.46431.1.S1_at--561--4491Chr01:19876154..19876178 (25 bp)
GCCGTAGTACCCTGTGGATTTGCTC
LOC_Os01g35330
Os.46431.1.S1_at--511--10672Chr06:11508872..11508895 (24 bp)
TTCCTTTTTTCAGCTGACCTCTCTT
NONE
Os.46431.1.S1_at--704--4292Chr06:11508872..11508893 (22 bp)
CCTTTTTTCAGCTGACCTCTCTTGT
NONE
Target Sequence 
CCTGGATGCCGGTATGGATGGTCTCCTCTTCTTCAANCNNCTCCATCNGTGTTACCAAGNCAGCGAATTNCTTCGCCACC
NTCTTTGGATTGAGTCATTGGTTNGCTGGATTTGGGGAAGNTCTTCCTCTTTGTCTCACAGCNCTAACCATGNAGGGNTT
ATCGTTTCGGGTTGAGCACAGATTGGATTTGCAATCTTGGTTTGCNAGGATTACAGTATGAGCTCCTCAGATTCAACGAT
GAACTCCGTGGAAATCTTTTGCGGAGTCCGGTGATGCTTACACCAAAATCTANCGGTTCGCAGCAAACCTCTCATATGTG
TCGTTTCCGTGGAGGCAACCGTAGGGGCTTTCCGGTTTGTCAAGCGGAGTGCACATCAATATAGGCCCTCGGATGCAGTC
GTCGCGGCATTGCCGTAGTACCCTGTGGATTTGCTCCATTGCTGCTTAGTTTCATTAGGAAGTTTGCTTCCTTTTTTCAG
CTGACCTCTCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46431.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis