Browse Element(s) Details


Os.11525.1.S1_s_at

Description gb:AK099321.1
DB_XREF= gi:32984530
TID=Os.11525.1
CNT=57
FEA=FLmRNA
TIER=FL+Stack
STK=20
UG=Os.11525 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-035-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033020I22, full insert sequence.
FL= gb:AK104378.1 gb:AK099218.1 gb:AK099321.1 gb:AK099244.1 gb:AK065253.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4818011/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48150Os.15951.1.S1_at2/113+27344213..27346915expressed protein
LOC_Os03g48150OsAffx.5018.1.S1_at1/113+27344213..27346915expressed protein
LOC_Os03g48160OsAffx.13401.1.S1_at10/113+27352532..27355617expressed protein
LOC_Os03g48170Os.20457.1.S1_at11/113+27357503..27362415Isoamylase N-terminal domain containing protein, expressed
LOC_Os03g48170OsAffx.25620.1.S1_x_at11/113+27357503..27362415Isoamylase N-terminal domain containing protein, expressed
LOC_Os03g48170OsAffx.25620.1.S1_at10/113+27357503..27362415Isoamylase N-terminal domain containing protein, expressed
LOC_Os03g48180Os.11525.1.S1_s_at11/113+27362672..27367943POT family protein, expressed
LOC_Os03g48190Os.52470.1.S1_at11/113+27381017..27385764expressed protein
LOC_Os03g48190OsAffx.13402.1.S1_at11/113+27381017..27385764expressed protein
LOC_Os03g48200NANA3+27390231..27390977Ribosome inactivating protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11525.1.S1_s_at--237--7991Chr03:27363263..27363287 (25 bp)
GGAGGCGTTCAACCTCATCAGCCAG
LOC_Os03g48180
Os.11525.1.S1_s_at--557--1751Chr03:27363252..27363276 (25 bp)
ACCTCATCAGCCAGATCGAGTTCTA
LOC_Os03g48180
Os.11525.1.S1_s_at--624--9371Chr03:27363237..27363261 (25 bp)
TCGAGTTCTACTACAAGGAGATCCC
LOC_Os03g48180
Os.11525.1.S1_s_at--1080--2911Chr03:27363223..27363247 (25 bp)
AAGGAGATCCCGGAGCACATGCGGA
LOC_Os03g48180
Os.11525.1.S1_s_at--1075--2511Chr03:27363157..27363181 (25 bp)
AACTACCTCAGTGGGTTCCTCGTCA
LOC_Os03g48180
Os.11525.1.S1_s_at--1136--8471Chr03:27363097..27363121 (25 bp)
TGGCTGGCGCAGGACCTCAACAAGG
LOC_Os03g48180
Os.11525.1.S1_s_at--145--9571Chr03:27363060..27363084 (25 bp)
TCTTCTACTGGATGATCGCCGGCAT
LOC_Os03g48180
Os.11525.1.S1_s_at--216--9611Chr03:27363021..27363045 (25 bp)
TCATCTACTTCATGATCTGCGCCAA
LOC_Os03g48180
Os.11525.1.S1_s_at--845--2051Chr03:27363015..27363039 (25 bp)
ACTTCATGATCTGCGCCAAGTGGTA
LOC_Os03g48180
Os.11525.1.S1_s_at--1152--7591Chr03:27362979..27363003 (25 bp)
GGGCAGCCGCCAACTGAGATGCAAG
LOC_Os03g48180
Os.11525.1.S1_s_at--1069--7511Chr03:27362893..27362917 (25 bp)
GTGGAGTGCTTTTAGCTGGGTTTTT
LOC_Os03g48180
Target Sequence 
GGAGGCGTTCAACCTCATCAGCCAGATCGAGTTCTACTACAAGGAGATCCCGGAGCACATGCGGAGCGTGGCCGGCGCGC
TCGCCTTCTGCAACCTGGCGCTGGGGAACTACCTCAGTGGGTTCCTCGTCACCATCGTGCACCGGACCACCGGCGCCGGG
AGCAACTGGCTGGCGCAGGACCTCAACAAGGGGAGGCTCGACCTCTTCTACTGGATGATCGCCGGCATCGGCATCTTCAA
CATCATCTACTTCATGATCTGCGCCAAGTGGTACAGGTTCAAGGGGGCAGCCGCCAACTGAGATGCAAGTGAAGTGAAGT
TTGTTCGTTTGGGTGGTTAATTAATTATGTCAATGGCAGATAATTAATTGGTGGAGTGCTTTTAGCTGGGTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11525.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis