Browse Element(s) Details


OsAffx.13402.1.S1_at

Description tigr:9631.m04689
TID=OsAffx.13402.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4819011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48170Os.20457.1.S1_at11/113+27357503..27362415Isoamylase N-terminal domain containing protein, expressed
LOC_Os03g48170OsAffx.25620.1.S1_x_at11/113+27357503..27362415Isoamylase N-terminal domain containing protein, expressed
LOC_Os03g48170OsAffx.25620.1.S1_at10/113+27357503..27362415Isoamylase N-terminal domain containing protein, expressed
LOC_Os03g48180Os.11525.1.S1_s_at11/113+27362672..27367943POT family protein, expressed
LOC_Os03g48190Os.52470.1.S1_at11/113+27381017..27385764expressed protein
LOC_Os03g48190OsAffx.13402.1.S1_at11/113+27381017..27385764expressed protein
LOC_Os03g48200NANA3+27390231..27390977Ribosome inactivating protein, expressed
LOC_Os03g48220Os.49086.1.S1_at11/113+27393864..27394942expressed protein
LOC_Os03g48230Os.51430.1.S1_at11/113+27396977..27400354expressed protein
LOC_Os03g48230Os.54815.1.S1_at3/113+27396977..27400354expressed protein
LOC_Os03g48250NANA3+27403712..27404707expressed protein
LOC_Os03g48260Os.14899.1.S1_at10/113+27407467..27412743expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13402.1.S1_at--955--2331Chr03:27384150..27384174 (25 bp)
AAAGCAAGTATTTACGGCAGAGGAA
LOC_Os03g48190
OsAffx.13402.1.S1_at--1088--3091Chr03:27384104..27384128 (25 bp)
AATATGGTTCAAATACTGTATGCGT
LOC_Os03g48190
OsAffx.13402.1.S1_at--616--3091Chr03:27384093..27384117 (25 bp)
AATACTGTATGCGTTTGTTCGATAC
LOC_Os03g48190
OsAffx.13402.1.S1_at--328--4631Chr03:27383916..27384107 (25 bp)
GCGTTTGTTCGATACAGTGGATCTC
LOC_Os03g48190
OsAffx.13402.1.S1_at--241--6471Chr03:27383906..27383928 (23 bp)
GATACAGTGGATCTCAATTAATTGT
LOC_Os03g48190
OsAffx.13402.1.S1_at--944--5591Chr03:27383875..27383899 (25 bp)
GAAATTTCTCTTGTCATAGCTGCTG
LOC_Os03g48190
OsAffx.13402.1.S1_at--807--191Chr03:27383872..27383896 (25 bp)
ATTTCTCTTGTCATAGCTGCTGCTT
LOC_Os03g48190
OsAffx.13402.1.S1_at--197--351Chr03:27381943..27382314 (25 bp)
ATAACTTTATAGGATGGCAGGCCAT
LOC_Os03g48190
OsAffx.13402.1.S1_at--576--8271Chr03:27381928..27381952 (25 bp)
GGCAGGCCATGCTAGTTGCCATAAT
LOC_Os03g48190
OsAffx.13402.1.S1_at--950--8431Chr03:27381926..27381948 (23 bp)
GGCCATGCTAGTTGCCATAATTGAT
LOC_Os03g48190
OsAffx.13402.1.S1_at--956--9191Chr03:27381731..27381936 (25 bp)
TGCCATAATTGATATCCATGACCGA
LOC_Os03g48190
Target Sequence 
AAAGCAAGTATTTACGGCAGAGGAAGCAATTTTTTTCTACATAGTCAATATGGTTCAAATACTGTATGCGTTTGTTCGAT
ACAGTGGATCTCAATTAATTGTGATTATGAAATTTCTCTTGTCATAGCTGCTGCTTACCCTAGCCATGCTGTGGACATGG
TTCCCATAAGAACTCTTCAGGTGAGTTATATCAAGTTAGATCAAAAGGAAGTGGATGATGATGTGGCATCTTTGCATGTT
AAGCTTAAGGAGTTAGTGCGGGATAACTTTATAGGATGGCAGGCCATGCTAGTTGCCATAATTGATATCCATGACCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13402.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis