Browse Element(s) Details


Os.54815.1.S1_at

Description gb:AK106820.1
DB_XREF= gi:32992029
TID=Os.54815.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54815 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-D08, full insert sequence.
FL= gb:AK106820.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g482303/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48190Os.52470.1.S1_at11/113+27381017..27385764expressed protein
LOC_Os03g48190OsAffx.13402.1.S1_at11/113+27381017..27385764expressed protein
LOC_Os03g48200NANA3+27390231..27390977Ribosome inactivating protein, expressed
LOC_Os03g48220Os.49086.1.S1_at11/113+27393864..27394942expressed protein
LOC_Os03g48230Os.51430.1.S1_at11/113+27396977..27400354expressed protein
LOC_Os03g48230Os.54815.1.S1_at3/113+27396977..27400354expressed protein
LOC_Os03g48250NANA3+27403712..27404707expressed protein
LOC_Os03g48260Os.14899.1.S1_at10/113+27407467..27412743expressed protein
LOC_Os03g48270Os.5385.1.S1_at11/113+27416586..27421932Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os03g48280OsAffx.25621.1.S1_at11/113+27422907..27423597hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54815.1.S1_at--289--1771Chr03:27397413..27397437 (25 bp)
ACCTGCTCGACTTCGGGAGCGGCGC
LOC_Os03g48230
Os.54815.1.S1_at--588--7331Chr03:27397017..27397041 (25 bp)
GGACGTTCCGGCAGTCGGCAAAAGC
LOC_Os03g48230
Os.54815.1.S1_at--500--3451Chr03:27397006..27397030 (25 bp)
CAGTCGGCAAAAGCTGCTCGGCGAC
LOC_Os03g48230
Os.54815.1.S1_at--484--6271Chr03:27396967..27396991 (25 bp)
GATGTGCCGCACTGAGTCTACTGAC
NONE
Os.54815.1.S1_at--459--5111Chr03:27396959..27396983 (25 bp)
GCACTGAGTCTACTGACCTCTATGA
NONE
Os.54815.1.S1_at--552--1971Chr03:27396948..27396972 (25 bp)
ACTGACCTCTATGATAAACTGTTAA
NONE
Os.54815.1.S1_at--559--6071Chr03:27396912..27396936 (25 bp)
GAGTAGTAGTAATAACGTTTCCATT
NONE
Os.54815.1.S1_at--205--1691Chr03:27396898..27396922 (25 bp)
ACGTTTCCATTAGCGACAAGTTCTC
NONE
Os.54815.1.S1_at--425--1651Chr03:27396887..27396911 (25 bp)
AGCGACAAGTTCTCGTTCATTTGTG
NONE
Os.54815.1.S1_at--255--6731Chr03:27396879..27396903 (25 bp)
GTTCTCGTTCATTTGTGTATGTGTG
NONE
Os.54815.1.S1_at--578--7471Chr03:27396857..27396881 (25 bp)
GTGTGAGTCCACAATTTCCAGCAGC
NONE
Target Sequence 
ACCTGCTCGACTTCGGGAGCGGCGCCGGGGCGCTGGCGGTGAGGGTCGACACCATGTTCGTCGCCGGCTTCGCCAACCGG
AGCGGCCACTGGCACGCCCTGCGCGGCAGCGACCACCTGTTCCACCGCGGCGACCACCACCACCAGCGAGCACGGCCCCT
GCTGCTCCGGCCGATCGCGCGGGCCGTGCTGGAGGCCAGCCGGATGGGGAGGGCGCCCGCCGGGGAGCAGGCCCGGATCG
CCGACGAGCACCTGCCGTACATCGAGCACTGGGACGCCATGTGGCACGAGCTCGGGAGGTGGAGGCGGCGCGGCGAGTGG
GGCGGGCCGTTCACCGGCGTGCTGAGGGAGCGCGCCAACATCGGCAGCGCGGAGGAGGCGCTCGCCGTCGTCGGCTGGAC
GTTCCGGCAGTCGGCAAAAGCTGCTCGGCGACGGCTCGGCGGCGGCGATGTGCCGCACTGAGTCTACTGACCTCTATGAT
AAACTGTTAAAGTTAGTTGTAGAGTAGTAGTAATAACGTTTCCATTAGCGACAAGTTCTCGTTCATTTGTGTATGTGTGT
GAGTCCACAATTTCCAGCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54815.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis