Browse Element(s) Details


OsAffx.25621.1.S1_at

Description tigr:9631.m04699
TID=OsAffx.25621.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4828011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48230Os.51430.1.S1_at11/113+27396977..27400354expressed protein
LOC_Os03g48230Os.54815.1.S1_at3/113+27396977..27400354expressed protein
LOC_Os03g48250NANA3+27403712..27404707expressed protein
LOC_Os03g48260Os.14899.1.S1_at10/113+27407467..27412743expressed protein
LOC_Os03g48270Os.5385.1.S1_at11/113+27416586..27421932Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os03g48280OsAffx.25621.1.S1_at11/113+27422907..27423597hypothetical protein
LOC_Os03g48300Os.19164.1.S1_at11/113+27436334..27453097LOC495012 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25621.1.S1_at--56--8051Chr03:27422990..27423014 (25 bp)
GGAGAAGTACGGTGTCAGCATGAAA
LOC_Os03g48280
OsAffx.25621.1.S1_at--778--8711Chr03:27423002..27423026 (25 bp)
TGTCAGCATGAAAGGCGCCGACGGC
LOC_Os03g48280
OsAffx.25621.1.S1_at--44--8471Chr03:27423047..27423071 (25 bp)
TGGCCGTGCACAAACACGACTACTC
LOC_Os03g48280
OsAffx.25621.1.S1_at--503--4151Chr03:27423175..27423199 (25 bp)
CGCGACCTTATTGGCGGCCTCGAGA
LOC_Os03g48280
OsAffx.25621.1.S1_at--519--4671Chr03:27423302..27423326 (25 bp)
GCGTGGCAACACTGTCGATGGTGCT
LOC_Os03g48280
OsAffx.25621.1.S1_at--952--2471Chr03:27423309..27423333 (25 bp)
AACACTGTCGATGGTGCTGACCCAA
LOC_Os03g48280
OsAffx.25621.1.S1_at--709--8711Chr03:27423314..27423338 (25 bp)
TGTCGATGGTGCTGACCCAAGCCCT
LOC_Os03g48280
OsAffx.25621.1.S1_at--453--2671Chr03:27423332..27423356 (25 bp)
AAGCCCTGCGGCTAAGGCCAGTCGG
LOC_Os03g48280
OsAffx.25621.1.S1_at--524--7471Chr03:27423477..27423501 (25 bp)
GTGGGACAGCCCGTTCACTGAGCTG
LOC_Os03g48280
OsAffx.25621.1.S1_at--722--8591Chr03:27423533..27423557 (25 bp)
TGGTCCGTGTGATCGCGAACAAGAG
LOC_Os03g48280
OsAffx.25621.1.S1_at--750--7391Chr03:27423541..27423565 (25 bp)
GTGATCGCGAACAAGAGCTTCGTGC
LOC_Os03g48280
Target Sequence 
GGAGAAGTACGGTGTCAGCATGAAAGGCGCCGACGGCGACGTGGTGCACCGTGCACCTGGCCGTGCACAAACACGACTAC
TCCTTCGCTGGCTTCGCCAACCGAAGCGGCCATTGGCACGTCTTCCCCGGCGTCTCCCGTTCCGCAACACCTACCGCGAC
CTTATTGGCGGCCTCGAGAACATCCCCGGCCTGCCGCTCAGGAGGGCGGCCTCGCTGCGCGCCATCGGGGCACTGTCCTC
CTACGACGCCGGTGCCACCGGCGAGGAGGCGATGAGGCGTGGCGTGGCAACACTGTCGATGGTGCTGACCCAAGCCCTGC
GGCTAAGGCCAGTCGGGGAGACCGTGTCGAGCAGGTGGGAGAGCGGTGAGGCGCGCGTGGCGGCGGAGCACCTGCCGTAC
ATCGAGCACTGGTACACCATGTCGTTCGAGGTCCTCTGGTGGAGGCGCACCGGGAGGTGGGACAGCCCGTTCACTGAGCT
GCTGAGGAGGCGTGCCGGCGAGGCGCTCGCCGTGGTCCGTGTGATCGCGAACAAGAGCTTCGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25621.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis