Browse Element(s) Details


Os.14899.1.S1_at

Description gb:AK103539.1
DB_XREF= gi:32988748
TID=Os.14899.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14899 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033132C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033132C02, full insert sequence.
FL= gb:AK103539.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4826010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48190Os.52470.1.S1_at11/113+27381017..27385764expressed protein
LOC_Os03g48190OsAffx.13402.1.S1_at11/113+27381017..27385764expressed protein
LOC_Os03g48200NANA3+27390231..27390977Ribosome inactivating protein, expressed
LOC_Os03g48220Os.49086.1.S1_at11/113+27393864..27394942expressed protein
LOC_Os03g48230Os.51430.1.S1_at11/113+27396977..27400354expressed protein
LOC_Os03g48230Os.54815.1.S1_at3/113+27396977..27400354expressed protein
LOC_Os03g48250NANA3+27403712..27404707expressed protein
LOC_Os03g48260Os.14899.1.S1_at10/113+27407467..27412743expressed protein
LOC_Os03g48270Os.5385.1.S1_at11/113+27416586..27421932Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os03g48280OsAffx.25621.1.S1_at11/113+27422907..27423597hypothetical protein
LOC_Os03g48300Os.19164.1.S1_at11/113+27436334..27453097LOC495012 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14899.1.S1_at--784--8431Chr03:27412163..27412187 (25 bp)
GGCCTTACCAGAACCAGCGCGGTGG
LOC_Os03g48260
Os.14899.1.S1_at--548--2031Chr03:27412346..27412370 (25 bp)
ACTATAATGAGCCTGGTTACTACCA
LOC_Os03g48260
Os.14899.1.S1_at--1098--7731Chr03:27412411..27412435 (25 bp)
GGTGGTGGCAACTCTTATTACAACA
LOC_Os03g48260
Os.14899.1.S1_at--843--8451Chr03:27412461..27412485 (25 bp)
TGGCCACGCCCATCCTGGGAGGGTT
LOC_Os03g48260
Os.14899.1.S1_at--863--8911Chr03:27412485..27412509 (25 bp)
TGAGCTGGGCGCAAACGCTTAGCTT
LOC_Os03g48260
Os.14899.1.S1_at--726--9991Chr03:27412504..27412528 (25 bp)
TAGCTTCCTAACTATTTTGCTTGGA
LOC_Os03g48260
Os.14899.1.S1_at--670--7471Chr03:27412563..27412587 (25 bp)
GTGGGAGCCATTTTGTTATTATAGA
LOC_Os03g48260
Os.14899.1.S1_at--118--2531Chr03:27412591..27412615 (25 bp)
AACTTAGCCCTTTATTATGTCAACA
LOC_Os03g48260
Os.14899.1.S1_at--966--7091Chr03:27412639..27412663 (25 bp)
GTCACTCCAATGACTTTCATATGGA
LOC_Os03g48260
Os.14899.1.S1_at--718--7811Chr03:27412706..27412730 (25 bp)
GGTCATATTCGTTCTCCTTAATTCC
LOC_Os03g48260
Os.14899.1.S1_at--467--9231NONE
TCCTTAATTCCCATTTCTTGTGTTT
NONE
Target Sequence 
GGCCTTACCAGAACCAGCGCGGTGGTGGTGGTCGTGGTGGTGGCAGGAGGGGTTACCAGAATGGAGGTCGTGGTGGACGT
GGGGGGCGAGGAATGGGCGGTGGCGGGTACCAGAATGGTCGTNGTGGTGGCGGCGGCGGTGGCTACCAGAATGGCCGTGG
TGGGGGTGAGGGTGGTGGGTACTACTATAATGAGCCTGGTTACTACCAGCANGAGGGGGTACAGCAACAGAGGCNANGGG
GTGGTCGCTCTGGTGGTGGCAACTCTTATTACAACAATCAAGGTGGAGGTTCGCAGGGAGGTGGCCACGCCCATCCTGGG
AGGGTTGAGCTGGGCGCAAACGCTTAGCTTCCTAACTATTTTGCTTGGAGGAGTGAGTGTTACGCGAGGAGAGGACATAA
TNTGTGGGAGCCATTTTGTTATTATAGAACTAACTTAGCCCTTTATTATGTCAACATTTGCCCCCCTCNGNNAGTTCTNT
TGTCACTCCAATGACTTTCATATGGATGGTTGGTTGATAATGCGGAATACTTTGGGGAAGTAGTTTAAGGTCATATTCGT
TCTCCTTAATTCCCATTTCTTGTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14899.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis