Browse Element(s) Details


Os.49086.1.S1_at

Description gb:AK064673.1
DB_XREF= gi:32974691
TID=Os.49086.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49086 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-115-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-E06, full insert sequence.
FL= gb:AK064673.1 gb:AK119706.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4822011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48190Os.52470.1.S1_at11/113+27381017..27385764expressed protein
LOC_Os03g48190OsAffx.13402.1.S1_at11/113+27381017..27385764expressed protein
LOC_Os03g48200NANA3+27390231..27390977Ribosome inactivating protein, expressed
LOC_Os03g48220Os.49086.1.S1_at11/113+27393864..27394942expressed protein
LOC_Os03g48230Os.51430.1.S1_at11/113+27396977..27400354expressed protein
LOC_Os03g48230Os.54815.1.S1_at3/113+27396977..27400354expressed protein
LOC_Os03g48250NANA3+27403712..27404707expressed protein
LOC_Os03g48260Os.14899.1.S1_at10/113+27407467..27412743expressed protein
LOC_Os03g48270Os.5385.1.S1_at11/113+27416586..27421932Calcium-dependent protein kinase, isoform 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49086.1.S1_at--585--9331Chr03:27394058..27394082 (25 bp)
TCGCCATTGCCAAGCTGCTCGCGAA
LOC_Os03g48220
Os.49086.1.S1_at--926--991Chr03:27394010..27394034 (25 bp)
AGGATCACAGCCACAGCGCCTGATA
LOC_Os03g48220
Os.49086.1.S1_at--344--3311Chr03:27393999..27394023 (25 bp)
CACAGCGCCTGATACTTATATGGAG
LOC_Os03g48220
Os.49086.1.S1_at--806--831Chr03:27393980..27394004 (25 bp)
ATGGAGTATATTCTGCATTTGCACG
LOC_Os03g48220
Os.49086.1.S1_at--197--3591Chr03:27393965..27393989 (25 bp)
CATTTGCACGGGTGCTGTTTCTCTG
LOC_Os03g48220
Os.49086.1.S1_at--94--10591Chr03:27393947..27393971 (25 bp)
TTCTCTGAATAAAACGTTGCTCTCT
LOC_Os03g48220
Os.49086.1.S1_at--290--2431Chr03:27393937..27393961 (25 bp)
AAAACGTTGCTCTCTATGCTCTAGT
LOC_Os03g48220
Os.49086.1.S1_at--819--611Chr03:27393922..27393946 (25 bp)
ATGCTCTAGTGTCAGTTCGTGTGTC
LOC_Os03g48220
Os.49086.1.S1_at--613--9651Chr03:27393911..27393935 (25 bp)
TCAGTTCGTGTGTCACCGTGATGTC
LOC_Os03g48220
Os.49086.1.S1_at--96--1791Chr03:27393897..27393921 (25 bp)
ACCGTGATGTCTGTGTTCGTTGTTC
LOC_Os03g48220
Os.49086.1.S1_at--28--10611Chr03:27393882..27393906 (25 bp)
TTCGTTGTTCCCTTTCTGAATGGGA
LOC_Os03g48220
Target Sequence 
TCGCCATTGCCAAGCTGCTCGCGAACCGCAGCTTCGTGCNGCTGCTGCAGGATCACAGCCACAGCGCCTGATACTTATAT
GGAGTATATTCTGCATTTGCACGGGTGCTGTTTCTCTGAATAAAACGTTGCTCTCTATGCTCTAGTGTCAGTTCGTGTGT
CACCGTGATGTCTGTGTTCGTTGTTCCCTTTCTGAATGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49086.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis