Browse Element(s) Details


Os.5385.1.S1_at

Description gb:AK105102.1
DB_XREF= gi:32990311
TID=Os.5385.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5385 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-100-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-D05, full insert sequence.
FL= gb:AK105102.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4827011/11Calcium-dependent protein kinase, isoform 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48220Os.49086.1.S1_at11/113+27393864..27394942expressed protein
LOC_Os03g48230Os.51430.1.S1_at11/113+27396977..27400354expressed protein
LOC_Os03g48230Os.54815.1.S1_at3/113+27396977..27400354expressed protein
LOC_Os03g48250NANA3+27403712..27404707expressed protein
LOC_Os03g48260Os.14899.1.S1_at10/113+27407467..27412743expressed protein
LOC_Os03g48270Os.5385.1.S1_at11/113+27416586..27421932Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os03g48280OsAffx.25621.1.S1_at11/113+27422907..27423597hypothetical protein
LOC_Os03g48300Os.19164.1.S1_at11/113+27436334..27453097LOC495012 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009738biological_processabscisic acid mediated signaling
GO:0004672molecular_functionprotein kinase activity
GO:0004685molecular_functioncalcium- and calmodulin-dependent protein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5385.1.S1_at--1156--7291Chr03:27421160..27421184 (25 bp)
GTGCTCGACCACATCCTTAGAGAAG
LOC_Os03g48270
Os.5385.1.S1_at--726--9411Chr03:27421500..27421524 (25 bp)
TCGTGGCGATGATGAAATCCGGGAC
LOC_Os03g48270
Os.5385.1.S1_at--477--8211Chr03:27421545..27421569 (25 bp)
GGCAATACTCGAGGGAGCGGTTCAA
LOC_Os03g48270
Os.5385.1.S1_at--498--2771Chr03:27421568..27421592 (25 bp)
AAGACGCTCAGCAACAGCCTCATCA
LOC_Os03g48270
Os.5385.1.S1_at--1094--4851Chr03:27421617..27421641 (25 bp)
GCTAGCTAGCTCGACGAATTCAGTC
LOC_Os03g48270
Os.5385.1.S1_at--20--3151Chr03:27421633..27421657 (25 bp)
AATTCAGTCGATTCAGGCTTGAGAA
LOC_Os03g48270
Os.5385.1.S1_at--192--8871Chr03:27421704..27421728 (25 bp)
TGATGCATACTTCATTCGAATTTGA
LOC_Os03g48270
Os.5385.1.S1_at--9--9251Chr03:27421739..27421763 (25 bp)
TCCATTTCGTCCAATTTTTCTTTTG
LOC_Os03g48270
Os.5385.1.S1_at--212--5431Chr03:27421798..27421822 (25 bp)
GAACCTTCTTTGTGTAGGATGTGTT
LOC_Os03g48270
Os.5385.1.S1_at--438--7671Chr03:27421833..27421857 (25 bp)
GGGATTGTTTCAGCATTCGTTGTAC
LOC_Os03g48270
Os.5385.1.S1_at--893--3971Chr03:27421857..27421881 (25 bp)
CGTGTTTGAAATTGCGTCGGGTGTA
LOC_Os03g48270
Target Sequence 
GTGCTCGACCACATCCTTAGAGAAGTCGACACCGACAAGGATGGGCGGATCAGCTACGAGGAGTTCGTGGCGATGATGAA
ATCCGGGACGGATTGGAGGAAGGCGTCGCGGCAATACTCGAGGGAGCGGTTCAAGACGCTCAGCAACAGCCTCATCAAGG
ACGGCTCGATCACCATGGCGCGCTAGCTAGCTCGACGAATTCAGTCGATTCAGGCTTGAGAATTCATTGAGAATATGAGG
TCGATGCAATGCTNGAANTTTTTTTTTTTTTGATGCATACTTCATTCGAATTTGAATTTGGGTTTTCCATTTCGTCCAAT
TTTTCTTTTGTACAATCTACTGTAGATCGATCGGTCGTCTATNTGAACCTTCTTTGTGTAGGATGTGTTAGTGAACGCTG
GGATTGTTTCAGCATTCGTTGTACGTGTTTGAAATTGCGTCGGGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5385.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis