Browse Element(s) Details


Os.52470.1.S1_at

Description gb:AK067324.1
DB_XREF= gi:32977342
TID=Os.52470.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52470 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013106E15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013106E15, full insert sequence.
FL= gb:AK067324.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4819011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48170Os.20457.1.S1_at11/113+27357503..27362415Isoamylase N-terminal domain containing protein, expressed
LOC_Os03g48170OsAffx.25620.1.S1_x_at11/113+27357503..27362415Isoamylase N-terminal domain containing protein, expressed
LOC_Os03g48170OsAffx.25620.1.S1_at10/113+27357503..27362415Isoamylase N-terminal domain containing protein, expressed
LOC_Os03g48180Os.11525.1.S1_s_at11/113+27362672..27367943POT family protein, expressed
LOC_Os03g48190Os.52470.1.S1_at11/113+27381017..27385764expressed protein
LOC_Os03g48190OsAffx.13402.1.S1_at11/113+27381017..27385764expressed protein
LOC_Os03g48200NANA3+27390231..27390977Ribosome inactivating protein, expressed
LOC_Os03g48220Os.49086.1.S1_at11/113+27393864..27394942expressed protein
LOC_Os03g48230Os.51430.1.S1_at11/113+27396977..27400354expressed protein
LOC_Os03g48230Os.54815.1.S1_at3/113+27396977..27400354expressed protein
LOC_Os03g48250NANA3+27403712..27404707expressed protein
LOC_Os03g48260Os.14899.1.S1_at10/113+27407467..27412743expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52470.1.S1_at--918--10731Chr03:27381488..27381512 (25 bp)
TTGACAGCCGGCCAATGCATCATTG
LOC_Os03g48190
Os.52470.1.S1_at--384--9851Chr03:27381457..27381481 (25 bp)
TAAATTCTCTGCTCTCTGGAATAGC
LOC_Os03g48190
Os.52470.1.S1_at--455--9831Chr03:27381350..27381374 (25 bp)
TAAATTTGCCCCATATCCGTTGCAT
LOC_Os03g48190
Os.52470.1.S1_at--372--8591Chr03:27381326..27381350 (25 bp)
TGGTATCCAAATCCAACACACCGAT
LOC_Os03g48190
Os.52470.1.S1_at--622--31Chr03:27381291..27381315 (25 bp)
ATTGGTGCTGGGTGCCACTACTAAC
LOC_Os03g48190
Os.52470.1.S1_at--355--8631Chr03:27381248..27381272 (25 bp)
TGGTGGCACCATATATAGCCGTATA
LOC_Os03g48190
Os.52470.1.S1_at--728--451Chr03:27381200..27381224 (25 bp)
ATCTCTCACGATGCTTGTATACCTC
LOC_Os03g48190
Os.52470.1.S1_at--163--4951Chr03:27381166..27381190 (25 bp)
GCATTGCGTGCACTTATACAACAGT
LOC_Os03g48190
Os.52470.1.S1_at--678--6851Chr03:27381102..27381126 (25 bp)
GTTTGCCCCTCTTGTATTTATGATG
LOC_Os03g48190
Os.52470.1.S1_at--426--5691Chr03:27381072..27381096 (25 bp)
GACTTGATTAATACTCTCTCCGGTT
LOC_Os03g48190
Os.52470.1.S1_at--402--9491Chr03:27381056..27381080 (25 bp)
TCTCCGGTTCTGTAATTCTTCTTGT
LOC_Os03g48190
Target Sequence 
TTGACAGCCGGCCAATGCATCATTGAGGGCATAAATTCTCTGCTCTCTGGAATAGCATGCAGTAACTCAATTCACAACGT
AATACTATAGCTTAAGGAGGCTGGAGCTGGCGGNCATTTTTGGGGCAACCTGTAAATTGTAAATTTGCCCCATATCCGTT
GCATGGTATCCAAATCCAACACACCGATGTGTTTGGTCATTGGTGCTGGGTGCCACTACTAACCTGCATGTTTGTAGAAT
CTGGTGGCACCATATATAGCCGTATAGATAGGGAGATGCAATGTGCCACATCTCTCACGATGCTTGTATACCTCGGAAAT
AAAGCATTGCGTGCACTTATACAACAGTTTTGCCATGAGAAAGGCTCTATGTTGCTGAACATTTTTTGTTTGCCCCTCTT
GTATTTATGATGTAATCGACTTGATTAATACTCTCTCCGGTTCTGTAATTCTTCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52470.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis